YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760385
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760385.

Description	E-value	Query Range	Subject Range
gi\|205352812, gi... - gi\|205352812\|ref\|YP_002226613.1\| hypothetical protein SG1640 [Salmonella enterica subsp. enterica se... gi\|206708824, gi... - gi\|207857021\|ref\|YP_002243672.1\| hypothetical protein SEN1571 [Salmonella enterica subsp. enterica s... gi\|197939386, gi... - gi\|198244870\|ref\|YP_002215661.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Dublin st... gi\|200390738, gi... - gi\|200390738\|ref\|ZP_03217349.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Virchow st... gi\|197212111, gi... - gi\|197248408\|ref\|YP_002146567.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Agona str... gi\|197242556, gi... - gi\|197264301\|ref\|ZP_03164375.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|194409151, gi... - gi\|194450847\|ref\|YP_002045514.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194468784, gi... - gi\|194468784\|ref\|ZP_03074768.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Kentucky s... lcl\|NC_016856.1_... - [gene=ydgH] [protein=hypothetical protein] [protein_id=YP_005237354.1] [location=complement(1564202.... gi\|168819233, gi... - gi\|205343724\|gb\|EDZ30488.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194445904, gi... - gi\|194445904\|ref\|YP_002040725.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Newport s... gi\|168240997, gi... - gi\|205339497\|gb\|EDZ26261.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|195634107, gi... - gi\|195634107\|gb\|EDX52459.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|167994455, gi... - gi\|205327670\|gb\|EDZ14434.1\| protein YdgH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|168229856, gi... - gi\|205335348\|gb\|EDZ22112.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|161363463, gi... - gi\|161614099\|ref\|YP_001588064.1\| hypothetical protein SPAB_01838 [Salmonella enterica subsp. enteric... gi\|16419997, gi\|... - gi\|16764823\|ref\|NP_460438.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16419997\|...	0.0	[1..314]	[1..314]
gi\|205323563, gi... - gi\|205323563\|gb\|EDZ11402.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|56413557, gi\|... - gi\|56413557\|ref\|YP_150632.1\| hypothetical protein SPA1377 [Salmonella enterica subsp. enterica serov...	0.0	[1..314]	[1..314]
gi\|224468542, gi... - gi\|224584015\|ref\|YP_002637813.1\| hypothetical protein SPC_2253 [Salmonella enterica subsp. enterica ... gi\|62127699, gi\|... - gi\|62180066\|ref\|YP_216483.1\| hypothetical protein SC1496 [Salmonella enterica subsp. enterica serova...	0.0	[1..314]	[1..314]
gi\|85675042, gi\|... - gi\|89108445\|ref\|AP_002225.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown gi\|169889103, gi... - gi\|170081268\|ref\|YP_001730588.1\| hypothetical protein ECDH10B_1737 [Escherichia coli str. K-12 subst... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown YDGH_ECOLI - Protein ydgH precursor - Escherichia coli gi\|238900820, gi... - gi\|238900820\|ref\|YP_002926616.1\| hypothetical protein BWG_1419 [Escherichia coli BW2952], gi\|2388629...	0.0	[1..314]	[1..314]
gi\|193070223, gi... - gi\|75234917\|ref\|ZP_00719196.1\| hypothetical protein EcolE1_01003201 [Escherichia coli E110019], gi\|1...	0.0	[1..314]	[1..314]
gi\|82776827, gi\|... - gi\|82776827\|ref\|YP_403176.1\| hypothetical protein SDY_1549 [Shigella dysenteriae Sd197], gi\|81240975... gi\|218351898, gi... - gi\|218695166\|ref\|YP_002402833.1\| hypothetical protein EC55989_1769 [Escherichia coli 55989], gi\|2183... gi\|81245440, gi\|... - gi\|82544029\|ref\|YP_407976.1\| hypothetical protein SBO_1532 [Shigella boydii Sb227], gi\|81245440\|gb\|A... gi\|218689550, gi... - gi\|218689550\|ref\|YP_002397762.1\| hypothetical protein ECED1_1803 [Escherichia coli ED1a], gi\|2184271... gi\|218369816, gi... - gi\|218699830\|ref\|YP_002407459.1\| hypothetical protein ECIAI39_1454 [Escherichia coli IAI39], gi\|2183... gi\|208730892, gi... - gi\|208816549\|ref\|ZP_03257669.1\| YdgH protein [Escherichia coli O157:H7 str. EC4045], gi\|208730892\|gb... gi\|83587939 - gi\|83587939\|ref\|ZP_00926565.1\| hypothetical protein Ecol1_01000972 [Escherichia coli 101-1] gi\|208810498, gi... - gi\|208810498\|ref\|ZP_03252374.1\| YdgH protein [Escherichia coli O157:H7 str. EC4206], gi\|208725014\|gb... gi\|187431181, gi... - gi\|75178501\|ref\|ZP_00698547.1\| hypothetical protein SboyB_01001421 [Shigella boydii BS512], gi\|18773... gi\|209157299, gi... - gi\|209395899\|ref\|YP_002270676.1\| YdgH protein [Escherichia coli O157:H7 str. EC4115], gi\|209157299\|g... gi\|157159019, gi... - gi\|75190644\|ref\|ZP_00703911.1\| hypothetical protein EcolE_01003954 [Escherichia coli E24377A], gi\|15... gi\|208820526, gi... - gi\|208820526\|ref\|ZP_03260846.1\| YdgH protein [Escherichia coli O157:H7 str. EC4042], gi\|208740649\|gb... gi\|237705545, gi... - gi\|237705545\|ref\|ZP_04536026.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|75195684, gi\|... - gi\|75195684\|ref\|ZP_00705754.1\| hypothetical protein EcolH_01001482 [Escherichia coli HS], gi\|1571610... gi\|217328971, gi... - gi\|217328971\|ref\|ZP_03445052.1\| YdgH protein [Escherichia coli O157:H7 str. TW14588], gi\|217318318\|g... gi\|251785062, gi... - gi\|251785062\|ref\|YP_002999366.1\| hypothetical protein B21_01563 [Escherichia coli BL21], gi\|24237733... gi\|190904004, gi... - gi\|75230947\|ref\|ZP_00717396.1\| hypothetical protein EcolB7_01000928 [Escherichia coli B7A], gi\|19116... gi\|215486780, gi... - gi\|215486780\|ref\|YP_002329211.1\| hypothetical protein E2348C_1689 [Escherichia coli O127:H6 str. E23... gi\|253324484, gi... - gi\|254288454\|ref\|YP_003054202.1\| hypothetical protein ECD_01573 [Escherichia coli BL21(DE3)], gi\|253... gi\|192927405, gi... - gi\|75257023\|ref\|ZP_00728583.1\| hypothetical protein EcolE2_01003073 [Escherichia coli E22], gi\|19306... gi\|218365243, gi... - gi\|218558474\|ref\|YP_002391387.1\| hypothetical protein ECS88_1649 [Escherichia coli S88], gi\|21836524... gi\|253973566, gi... - gi\|254161665\|ref\|YP_003044773.1\| hypothetical protein ECB_01573 [Escherichia coli B str. REL606], gi... gi\|188492042, gi... - gi\|75512963\|ref\|ZP_00735444.1\| hypothetical protein Ecol5_01002946 [Escherichia coli 53638], gi\|1884... gi\|218360939, gi... - gi\|218554171\|ref\|YP_002387084.1\| hypothetical protein ECIAI1_1654 [Escherichia coli IAI1], gi\|218360... gi\|254793221, gi... - gi\|254793221\|ref\|YP_003078058.1\| hypothetical protein ECSP_2168 [Escherichia coli O157:H7 str. TW143... gi\|91210815, gi\|... - gi\|91210815\|ref\|YP_540801.1\| hypothetical protein UTI89_C1792 [Escherichia coli UTI89], gi\|91072389\|... gi\|13361777, gi\|... - gi\|15831564\|ref\|NP_310337.1\| hypothetical protein ECs2310 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|115512914, gi... - gi\|117623790\|ref\|YP_852703.1\| hypothetical protein APECO1_687 [Escherichia coli APEC O1], gi\|1155129... gi\|124529241, gi... - gi\|124529241\|ref\|ZP_01700316.1\| protein of unknown function DUF1471 [Escherichia coli B], gi\|1245000... gi\|209769912, gi... - pir\|\|C85766 hypothetical protein Z2603 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|168775832, gi... - gi\|187768679\|gb\|EDU32523.1\| YdgH protein [Escherichia coli O157:H7 str. EC4196], gi\|168775832\|ref\|ZP... gi\|189360002, gi... - gi\|189360002\|gb\|EDU78421.1\| YdgH protein [Escherichia coli O157:H7 str. EC4486], gi\|168771144\|ref\|ZP... gi\|12515585, gi\|... - gi\|15802018\|ref\|NP_288039.1\| hypothetical protein Z2603 [Escherichia coli O157:H7 EDL933], gi\|125155... gi\|168789439, gi... - gi\|189370966\|gb\|EDU89382.1\| YdgH protein [Escherichia coli O157:H7 str. EC869], gi\|168789439\|ref\|ZP_... gi\|13361777, gi\|... - gi\|15831564\|ref\|NP_310337.1\| hypothetical protein ECs2310 [Escherichia coli O157:H7], gi\|13361777\|db... gi\|168783425, gi... - gi\|188999199\|gb\|EDU68185.1\| YdgH protein [Escherichia coli O157:H7 str. EC4076], gi\|168783425\|ref\|ZP... gi\|169754971, gi... - gi\|170020043\|ref\|YP_001724997.1\| hypothetical protein EcolC_2026 [Escherichia coli ATCC 8739], gi\|16... gi\|189376889, gi... - gi\|189376889\|gb\|EDU95305.1\| YdgH protein [Escherichia coli O157:H7 str. EC508], gi\|168800862\|ref\|ZP_... gi\|195938994 - gi\|195938994\|ref\|ZP_03084376.1\| hypothetical protein EscherichcoliO157_21632 [Escherichia coli O157:... gi\|170681099, gi... - gi\|170681099\|ref\|YP_001743650.1\| YdgH protein [Escherichia coli SMS-3-5], gi\|170518817\|gb\|ACB16995.1... gi\|168750585, gi... - gi\|188015228\|gb\|EDU53350.1\| YdgH protein [Escherichia coli O157:H7 str. EC4113], gi\|168750585\|ref\|ZP... gi\|168763695, gi... - gi\|189366191\|gb\|EDU84607.1\| YdgH protein [Escherichia coli O157:H7 str. EC4501], gi\|168763695\|ref\|ZP... gi\|168757482, gi... - gi\|189355533\|gb\|EDU73952.1\| YdgH protein [Escherichia coli O157:H7 str. EC4401], gi\|168757482\|ref\|ZP...	0.0	[1..314]	[1..314]
gi\|227886038, gi... - gi\|227886038\|ref\|ZP_04003843.1\| YdgH protein [Escherichia coli 83972], gi\|227836967\|gb\|EEJ47433.1\| Y... gi\|26247851, gi\|... - gi\|26247851\|ref\|NP_753891.1\| hypothetical protein c1996 [Escherichia coli CFT073], gi\|26108254\|gb\|AA...	0.0	[1..314]	[1..314]
gi\|110615125, gi... - gi\|110805577\|ref\|YP_689097.1\| hypothetical protein SFV_1619 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24112991, gi\|... - gi\|24112991\|ref\|NP_707501.1\| hypothetical protein SF1625 [Shigella flexneri 2a str. 301], gi\|2405195... gi\|30041367, gi\|... - gi\|30063118\|ref\|NP_837289.1\| hypothetical protein S1757 [Shigella flexneri 2a str. 2457T], gi\|300413...	0.0	[1..314]	[1..314]
gi\|194432011, gi... - gi\|83570994\|ref\|ZP_00922436.1\| hypothetical protein Sdys1_01000824 [Shigella dysenteriae 1012], gi\|1...	0.0	[1..314]	[1..314]
gi\|110343318, gi... - gi\|110641726\|ref\|YP_669456.1\| protein YdgH precursor [Escherichia coli 536], gi\|110343318\|gb\|ABG6955... gi\|75236685, gi\|... - gi\|75236685\|ref\|ZP_00720764.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas...	0.0	[1..314]	[1..314]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKNTLLAS ALLSAAAFSV HAATELTPEQ AAALKPYDRI VITGRFNAIG DAVSAVSRRA  60
   61 DKEGAASFYV VDTSEFGNSG NWRVVADVYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	2jnaA
Description:	No description for 2jnaA was found.

Predicted Domain #2

Region A:
Residues: [91-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADAPKADAPK NRVINGIVEL PKDQAVQLEP YDTVTVQGFY RSQPEVNDAI TKAAKQKGAY  60
   61 AFYIVRQIDA NQGGNQRITV FIY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.88
Match:	2nocA
Description:	No description for 2nocA was found.

Predicted Domain #3

Region A:
Residues: [174-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQDAKKRIVQ SPDAIPADSE AGRAALAQGG EAAKKVEIPG VATSASPSAE VGRFFETQSS  60
   61 KGGRYTVTLP DGTKVEELNK ATAAMMVPFD SVKFTGNYGN MTEISYQVAK RAAKKGAKYY 120
  121 HITRQWQERG NNITISADLY K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits