YRC Public Data Repository - Protein Structure Prediction

Protein:	YCED_SALTI
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCED_SALTI.

Description	E-value	Query Range	Subject Range
gi\|145271151, gi... - gi\|145639783\|ref\|ZP_01795385.1\| hypothetical protein CGSHiII_03251 [Haemophilus influenzae PittII], ... gi\|53733118 - gi\|53733118\|ref\|ZP_00156002.2\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote...	2.0E-46	[1..173]	[1..174]
gi\|229809820, gi... - gi\|229847277\|ref\|ZP_04467380.1\| hypothetical protein CGSHi7P49H1_00200 [Haemophilus influenzae 7P49H... gi\|229845462, gi... - gi\|229845462\|ref\|ZP_04465592.1\| hypothetical protein CGSHi6P18H1_05046 [Haemophilus influenzae 6P18H... gi\|145267436, gi... - gi\|145635292\|ref\|ZP_01790995.1\| hypothetical protein CGSHiAA_06979 [Haemophilus influenzae PittAA], ... gi\|42629171 - gi\|42629171\|ref\|ZP_00154720.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote...	2.0E-46	[1..173]	[1..174]
gi\|144978928, gi... - gi\|145628458\|ref\|ZP_01784258.1\| hypothetical protein CGSHi22121_05570 [Haemophilus influenzae 22.1-2... gi\|68248767, gi\|... - gi\|68248767\|ref\|YP_247879.1\| hypothetical protein NTHI0249 [Haemophilus influenzae 86-028NP], gi\|680...	3.0E-46	[1..173]	[1..174]
YCED_HAEIN, Y159... - (P43790) Hypothetical protein HI0159, Uncharacterized protein HI_0159 OS=Haemophilus influenzae GN=H... Y159_HAEIN - Uncharacterized protein HI_0159 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	5.0E-46	[1..173]	[1..174]
gi\|91210240, gi\|... - gi\|91210240\|ref\|YP_540226.1\| hypothetical protein UTI89_C1213 [Escherichia coli UTI89], gi\|91071814\|... EG11119 - DUF177 family protein / DUF177 family protein, function unknown gi\|13360930, gi\|... - gi\|15830720\|ref\|NP_309493.1\| hypothetical protein ECs1466 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110641264, gi... - gi\|110641264\|ref\|YP_668994.1\| hypothetical protein ECP_1080 [Escherichia coli 536], gi\|110342856\|gb\|... gi\|227886555, gi... - gi\|227886555\|ref\|ZP_04004360.1\| possible metal-binding, possibly nucleic acid-binding protein [Esche... gi\|226898137, gi... - gi\|237706927\|ref\|ZP_04537408.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238860465, gi... - gi\|238900342\|ref\|YP_002926138.1\| hypothetical protein BWG_0936 [Escherichia coli BW2952], gi\|2388604... gi\|251784618, gi... - gi\|251784618\|ref\|YP_002998922.1\| hypothetical protein B21_01092 [Escherichia coli BL21], gi\|24237689... gi\|253977309, gi... - gi\|254288002\|ref\|YP_003053750.1\| hypothetical protein ECD_01084 [Escherichia coli BL21(DE3)], gi\|253... gi\|117623274, gi... - gi\|117623274\|ref\|YP_852187.1\| hypothetical protein APECO1_170 [Escherichia coli APEC O1], gi\|1155123... gi\|254161194, gi... - gi\|254161194\|ref\|YP_003044302.1\| hypothetical protein ECB_01084 [Escherichia coli B str. REL606], gi... gi\|254792470, gi... - gi\|254792470\|ref\|YP_003077307.1\| hypothetical protein ECSP_1389 [Escherichia coli O157:H7 str. TW143... gi\|170683047, gi... - gi\|170683047\|ref\|YP_001744091.1\| hypothetical protein EcSMS35_2039 [Escherichia coli SMS-3-5], gi\|17... gi\|169888574, gi... - gi\|170080739\|ref\|YP_001730059.1\| hypothetical protein ECDH10B_1160 [Escherichia coli str. K-12 subst... gi\|195935478 - gi\|195935478\|ref\|ZP_03080860.1\| hypothetical protein EscherichcoliO157_03307 [Escherichia coli O157:... gi\|193071926, gi... - gi\|193071926\|ref\|ZP_03052774.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192954... gi\|208822618, gi... - gi\|208822618\|ref\|ZP_03262937.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208815652, gi... - gi\|208815652\|ref\|ZP_03256831.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|215264371, gi... - gi\|215486299\|ref\|YP_002328730.1\| hypothetical protein E2348C_1180 [Escherichia coli O127:H6 str. E23... gi\|209918343, gi... - gi\|209918343\|ref\|YP_002292427.1\| hypothetical protein ECSE_1152 [Escherichia coli SE11], gi\|20991160... YCED_ECOL6 - Uncharacterized protein YceD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yceD ... YCED_ECO57 - Uncharacterized protein YceD OS=Escherichia coli O157:H7 GN=yceD PE=4 SV=1 EG11119 - DUF177 family protein / DUF177 family protein, function unknown gi\|15801205, gi\|... - gi\|15801205\|ref\|NP_287222.1\| hypothetical protein Z1727 [Escherichia coli O157:H7 EDL933], gi\|125146... gi\|168783617, gi... - gi\|188999054\|gb\|EDU68040.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|218553665, gi... - gi\|218553665\|ref\|YP_002386578.1\| hypothetical protein ECIAI1_1123 [Escherichia coli IAI1], gi\|218360... YCED_ECOL6 - Uncharacterized protein yceD OS=Escherichia coli O6 GN=yceD PE=4 SV=1 gi\|217318643, gi... - gi\|217328216\|ref\|ZP_03444298.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218426604, gi... - gi\|218689040\|ref\|YP_002397252.1\| hypothetical protein ECED1_1231 [Escherichia coli ED1a], gi\|2184266... gi\|218557969, gi... - gi\|218557969\|ref\|YP_002390882.1\| hypothetical protein ECS88_1101 [Escherichia coli S88], gi\|21836473... gi\|218370395, gi... - gi\|218700409\|ref\|YP_002408038.1\| hypothetical protein ECIAI39_2073 [Escherichia coli IAI39], gi\|2183... gi\|218351353, gi... - gi\|218694621\|ref\|YP_002402288.1\| hypothetical protein EC55989_1200 [Escherichia coli 55989], gi\|2183... gi\|218431594, gi... - gi\|218704497\|ref\|YP_002412016.1\| hypothetical protein ECUMN_1263 [Escherichia coli UMN026], gi\|21843... gi\|75207787, gi\|... - gi\|75207787\|ref\|ZP_00708292.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote... YCED_ECOLI - Hypothetical protein yceD (G30K) - Escherichia coli gi\|82777299, gi\|... - gi\|82777299\|ref\|YP_403648.1\| hypothetical protein SDY_2062 [Shigella dysenteriae Sd197], gi\|81241447... gi\|157157658, gi... - gi\|75190145\|ref\|ZP_00703412.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote... gi\|89107934, gi\|... - gi\|89107934\|ref\|AP_001714.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406...	5.0E-46	[1..173]	[1..173]
gi\|56413824, gi\|... - gi\|56413824\|ref\|YP_150899.1\| hypothetical protein SPA1661 [Salmonella enterica subsp. enterica serov... gi\|197362747, gi... - gi\|197362747\|ref\|YP_002142384.1\| hypothetical protein SSPA1545 [Salmonella enterica subsp. enterica ...	1.0E-45	[1..173]	[1..173]
gi\|24112494, gi\|... - gi\|24112494\|ref\|NP_707004.1\| hypothetical protein SF1092 [Shigella flexneri 2a str. 301], gi\|2405138... gi\|74311649, gi\|... - gi\|74311649\|ref\|YP_310068.1\| hypothetical protein SSON_1108 [Shigella sonnei Ss046], gi\|73855126\|gb\|... gi\|82544446, gi\|... - gi\|82544446\|ref\|YP_408393.1\| hypothetical protein SBO_1975 [Shigella boydii Sb227], gi\|81245857\|gb\|A... gi\|157160614, gi... - gi\|75195271\|ref\|ZP_00705341.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote... gi\|188493444, gi... - gi\|75513531\|ref\|ZP_00735935.1\| COG1399: Predicted metal-binding, possibly nucleic acid-binding prote... gi\|124532250, gi... - gi\|124532250\|ref\|ZP_01702169.1\| protein of unknown function DUF177 [Escherichia coli B], gi\|12449808... gi\|187429425, gi... - gi\|187732433\|ref\|YP_001880742.1\| hypothetical protein SbBS512_E2236 [Shigella boydii CDC 3083-94], g... gi\|170020517, gi... - gi\|170020517\|ref\|YP_001725471.1\| hypothetical protein EcolC_2513 [Escherichia coli ATCC 8739], gi\|16... gi\|30062622, gi\|... - gi\|30062622\|ref\|NP_836793.1\| hypothetical protein S1172 [Shigella flexneri 2a str. 2457T], gi\|300408... gi\|110614651, gi... - gi\|110805103\|ref\|YP_688623.1\| hypothetical protein SFV_1109 [Shigella flexneri 5 str. 8401], gi\|1106...	1.0E-45	[1..173]	[1..173]
gi\|52307975, gi\|... - gi\|52425923\|ref\|YP_089060.1\| hypothetical protein MS1868 [Mannheimia succiniciproducens MBEL55E], gi...	3.0E-45	[1..173]	[1..174]
gi\|15603776, gi\|... - gi\|15603776\|ref\|NP_246850.1\| hypothetical protein PM1911 [Pasteurella multocida subsp. multocida str...	3.0E-45	[1..173]	[1..174]
gi\|37526728, gi\|... - gi\|37526728\|ref\|NP_930072.1\| hypothetical protein plu2838 [Photorhabdus luminescens subsp. laumondii...	1.0E-44	[1..172]	[1..172]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKVKLPLTL DPVRTAQKRL DYQGIYTPDQ VERVAESVVS VDSDVECSMS FAIDNQRLAV  60
   61 LTGDAVVTVS LECQRCGKPF THQVHTTYCF SPVRSDEQAE ALPEAYEPIE VNEFGEIDLL 120
  121 ATVEDEIILA LPVVPVHDSE HCEVSEADMV FGELPDEAQK PNPFAVLASL KRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.853872
Match:	PF02620.8
Description:	No description for PF02620.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits