YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29137826, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	350 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29137826, gi|....

Description	E-value	Query Range	Subject Range
gi\|192957243, gi... - gi\|75235940\|ref\|ZP_00720077.1\| COG1054: Predicted sulfurtransferase [Escherichia coli E110019], gi\|1...	363.0	[0..1]	[350..1]
gi\|30062593, gi\|... - gi\|30062593\|ref\|NP_836764.1\| hypothetical protein S1139 [Shigella flexneri 2a str. 2457T], gi\|300408... gi\|75228324, gi\|... - gi\|75228324\|ref\|ZP_00714974.1\| COG1054: Predicted sulfurtransferase [Escherichia coli B7A], gi\|19116... gi\|193064540, gi... - gi\|75257492\|ref\|ZP_00728995.1\| COG1054: Predicted sulfurtransferase [Escherichia coli E22], gi\|19306... gi\|56479808, gi\|... - gi\|56479808\|ref\|NP_706977.2\| hypothetical protein SF1062 [Shigella flexneri 2a str. 301], gi\|5638335... YCEA_SHIF8 - UPF0176 protein YceA OS=Shigella flexneri serotype 5b (strain 8401) GN=yceA PE=3 SV=1 YCEA_ECO7I - UPF0176 protein YceA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yceA PE=3 SV=1 YCEA_ECO8A - UPF0176 protein YceA OS=Escherichia coli O8 (strain IAI1) GN=yceA PE=3 SV=1 YCEA_ECO55 - UPF0176 protein YceA OS=Escherichia coli (strain 55989 / EAEC) GN=yceA PE=3 SV=1 gi\|194432461, gi... - gi\|83570497\|ref\|ZP_00921941.1\| COG1054: Predicted sulfurtransferase [Shigella dysenteriae 1012], gi\|... YCEA_SHIFL - UPF0176 protein YceA OS=Shigella flexneri GN=yceA PE=3 SV=4 YCEA_ECO24 - UPF0176 protein YceA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yceA PE=3 SV=1 gi\|194428459, gi... - gi\|75210329\|ref\|ZP_00710491.1\| COG1054: Predicted sulfurtransferase [Escherichia coli B171], gi\|1944...	363.0	[0..1]	[350..1]
YCEA_ECOHS - UPF0176 protein YceA OS=Escherichia coli O9:H4 (strain HS) GN=yceA PE=3 SV=1 gi\|124498774, gi... - gi\|124531155\|ref\|ZP_01701510.1\| Rhodanese domain protein [Escherichia coli B], gi\|124498774\|gb\|EAY46... YCEA_ECOLC - UPF0176 protein YceA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yceA PE=3 SV=1	363.0	[0..1]	[350..1]
EG11116 - putative rhodanese-related sulfurtransferase / Predicted rhodanese, function unknown EG11116 - putative rhodanese-related sulfurtransferase / Predicted rhodanese, function unknown gi\|194423065, gi... - gi\|83586410\|ref\|ZP_00925044.1\| COG1054: Predicted sulfurtransferase [Escherichia coli 101-1], gi\|194... gi\|188487775, gi... - gi\|75513500\|ref\|ZP_00735904.1\| COG1054: Predicted sulfurtransferase [Escherichia coli 53638], gi\|188... YCEA_ECOLI - UPF0176 protein yceA (ORF39.9) - Escherichia coli YCEA_ECODH - UPF0176 protein YceA OS=Escherichia coli (strain K12 / DH10B) GN=yceA PE=3 SV=1 gi\|89107901, gi\|... - gi\|89107901\|ref\|AP_001681.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... YCEA_ECOBW - UPF0176 protein YceA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yceA PE=3 SV=1	361.0	[0..1]	[350..1]
YCEA_ECO57 - UPF0176 protein YceA OS=Escherichia coli O157:H7 GN=yceA PE=3 SV=1 gi\|15801172, gi\|... - gi\|15801172\|ref\|NP_287189.1\| hypothetical protein Z1691 [Escherichia coli O157:H7 EDL933], gi\|125145... gi\|209773582, gi... - pir\|\|E85667 hypothetical protein yceA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217318579, gi... - gi\|217328152\|ref\|ZP_03444234.1\| rhodanese domain protein [Escherichia coli O157:H7 str. TW14588], gi... gi\|208815575, gi... - gi\|208815575\|ref\|ZP_03256754.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208728481, gi... - gi\|208808680\|ref\|ZP_03251017.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4206], gi\|... YCEA_ECO5E - UPF0176 protein YceA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yceA PE=3 SV=1 gi\|208738042, gi... - gi\|208822557\|ref\|ZP_03262876.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|13360897, gi\|... - gi\|15830687\|ref\|NP_309460.1\| hypothetical protein ECs1433 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168789990, gi... - gi\|189370468\|gb\|EDU88884.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|254792437, gi... - gi\|254792437\|ref\|YP_003077274.1\| hypothetical protein ECSP_1356 [Escherichia coli O157:H7 str. TW143... gi\|188999112, gi... - gi\|188999112\|gb\|EDU68098.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|195935444 - gi\|195935444\|ref\|ZP_03080826.1\| hypothetical protein EscherichcoliO157_03137 [Escherichia coli O157:... gi\|168802000, gi... - gi\|189375947\|gb\|EDU94363.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC508], gi\|16880... gi\|168764467, gi... - gi\|189365536\|gb\|EDU83952.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|188018044, gi... - gi\|188018044\|gb\|EDU56166.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168773900, gi... - gi\|187770468\|gb\|EDU34312.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189363247, gi... - gi\|189363247\|gb\|EDU81666.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4486], gi\|1687...	361.0	[0..1]	[350..1]
YCEA_SHISS - UPF0176 protein YceA OS=Shigella sonnei (strain Ss046) GN=yceA PE=3 SV=1	360.0	[0..1]	[350..1]
YCEA_ECOL5 - UPF0176 protein YceA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yceA PE=3 SV=1 gi\|75240652, gi\|... - gi\|75240652\|ref\|ZP_00724569.1\| COG1054: Predicted sulfurtransferase [Escherichia coli F11], gi\|19117... gi\|227836792, gi... - gi\|227886588\|ref\|ZP_04004393.1\| possible sulfurtransferase [Escherichia coli 83972], gi\|227836792\|gb... YCEA_ECOL6 - UPF0176 protein YceA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yceA PE=3 SV=... YCEA_ECOL6 - UPF0176 protein yceA OS=Escherichia coli O6 GN=yceA PE=3 SV=2	359.0	[0..1]	[350..1]
gi\|26107595, gi\|... - gi\|26247194\|ref\|NP_753234.1\| hypothetical protein c1321 [Escherichia coli CFT073], gi\|26107595\|gb\|AA...	359.0	[0..1]	[350..19]
gi\|48958 - gi\|48958\|emb\|CAA43318.1\| Orf39.9 [Escherichia coli]	359.0	[0..1]	[350..1]
YCEA_SHIDS - UPF0176 protein YceA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yceA PE=3 SV=1	359.0	[0..1]	[350..1]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVLHNRISN DELKAKMLAE SEPRTTISFY KYFTIASPQQ TRDALYQVFT ALDVFGRVYL  60
   61 AHEGINAQIS VPQSKVETFR QQLYTFDPAL DGVRLNIALE DDGKSFWVLR MKVRDRIVAD 120
  121 GIDDPSFDAS NVGDYLKAAD VNAMLDDPDA VFIDMRNHYE YEVGHFENAL EIPADTFREQ 180
  181 LPKAVEMLRE HADKKIVMYC TGGIRCEKAS AWMKHNGFNK VWHIEGGIIE YARRAREQGL 240
  241 PVRFIGKNFV F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1uarA
Description:	Crystal structure of Rhodanese from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [252-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DERMGERISD EVIAHCHQCG VSCDSHTNCK NDGCHLLFIQ CPQCASKFNG CCSEQCCEEL  60
   61 ALPEEEQRRR RAGRENGNKI FNKSRGRLNS KLSIPDPAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits