YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29137899, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29137899, gi|....

Description	E-value	Query Range	Subject Range
gi\|68562524, gi\|... - gi\|68562524\|ref\|ZP_00601779.1\| GCN5-related N-acetyltransferase:CoA-binding [Rubrobacter xylanophilu...	9.0E-33	[3..136]	[16..159]
gi\|241903107, gi... - gi\|241903107\|ref\|ZP_04787835.1\| ketol-acid reductoisomerase [Thermoanaerobacter brockii subsp. finni... ILVC_THEP3 - Ketol-acid reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ilvC...	5.0E-32	[1..134]	[4..140]
gi\|242232031, gi... - gi\|242256438\|ref\|ZP_04801329.1\| ketol-acid reductoisomerase [Thermoanaerobacter sp. X513], gi\|242232... ILVC_THEPX - Ketol-acid reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=ilvC PE=3 SV=1	8.0E-32	[1..134]	[4..140]
gi\|57641815, gi\|... - gi\|57641815\|ref\|YP_184293.1\| succinyl-CoA synthetase (NDP forming), large subunit [Thermococcus koda...	9.0E-32	[7..136]	[5..145]
gi\|26107387, gi\|... - gi\|26246987\|ref\|NP_753027.1\| hypothetical protein c1102 [Escherichia coli CFT073], gi\|26107387\|gb\|AA...	2.0E-31	[1..138]	[27..164]
gi\|7429389 - gi\|7429389\|pir\|\|D64837 hypothetical protein b0965 - Escherichia coli (strain K-12) gi\|1787199, gi\|4... - gi\|49176064\|ref\|NP_415485.3\| protein (unknown function) [Escherichia coli K12], gb\|AAC74051.1\| prote...	2.0E-31	[1..138]	[27..164]
gi\|18976605, gi\|... - gi\|18976605\|ref\|NP_577962.1\| hypothetical protein PF0233 [Pyrococcus furiosus DSM 3638], gi\|18892170...	2.0E-31	[7..136]	[4..144]
gi\|88602746, gi\|... - gi\|88602746\|ref\|YP_502924.1\| CoA-binding [Methanospirillum hungatei JF-1], gi\|88188208\|gb\|ABD41205.1...	3.0E-31	[11..136]	[237..370]
gi\|237707050, gi... - gi\|237707050\|ref\|ZP_04537531.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|74311523, gi\|... - gi\|74311523\|ref\|YP_309942.1\| hypothetical protein SSON_0970 [Shigella sonnei Ss046], gi\|73855000\|gb\|... gi\|81246122, gi\|... - gi\|82544711\|ref\|YP_408658.1\| hypothetical protein SBO_2266 [Shigella boydii Sb227], gi\|81246122\|gb\|A... gi\|91210061, gi\|... - gi\|91210061\|ref\|YP_540047.1\| hypothetical protein UTI89_C1031 [Escherichia coli UTI89], gi\|91071635\|... gi\|110614529, gi... - gi\|110804981\|ref\|YP_688501.1\| hypothetical protein SFV_0975 [Shigella flexneri 5 str. 8401], gi\|1106...	3.0E-31	[1..138]	[27..164]
gi\|82776256, gi\|... - gi\|82776256\|ref\|YP_402605.1\| hypothetical protein SDY_0940 [Shigella dysenteriae Sd197], gi\|81240404...	4.0E-31	[1..138]	[27..164]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKETDIADV LTSTRTIALV GASDKPDRPS YRVMKYLLEQ GYHVIPVAPK VAGKTLLGQQ  60
   61 GYATLADIPE KVDMVDVFRN SEAAWGVAQE AIAIGAKTLW LQLGVINEQA AVLARDAGMT 120
  121 VVMDRCPAIE IPRLGLAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	2duwA
Description:	No description for 2duwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits