YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16502238, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	417 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16502238, gi|....

Description	E-value	Query Range	Subject Range
gi\|15800809, gi\|... - gi\|15800809\|ref\|NP_286825.1\| paraquat-inducible protein A [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|218700531, gi... - gi\|218700531\|ref\|YP_002408160.1\| paraquat-inducible membrane protein A [Escherichia coli IAI39], gi\|... gi\|217326375, gi... - gi\|217326375\|ref\|ZP_03442459.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. TW14588]... gi\|170518506, gi... - gi\|170680788\|ref\|YP_001744219.1\| paraquat-inducible protein A [Escherichia coli SMS-3-5], gi\|1705185... gi\|189372598, gi... - gi\|189372598\|gb\|EDU91014.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|187768378, gi... - gi\|187768378\|gb\|EDU32222.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|168762911, gi... - gi\|189366777\|gb\|EDU85193.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|209157472, gi... - gi\|209396072\|ref\|YP_002269619.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4115]... gi\|208738264, gi... - gi\|208822779\|ref\|ZP_03263098.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4042],... gi\|208816359, gi... - gi\|208816359\|ref\|ZP_03257538.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4045],... gi\|82776241, gi\|... - gi\|82776241\|ref\|YP_402590.1\| paraquat-inducible protein A [Shigella dysenteriae Sd197], gi\|81240389\|... gi\|208808193, gi... - gi\|208808193\|ref\|ZP_03250530.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4206],... gi\|13360494, gi\|... - gi\|15830288\|ref\|NP_309061.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168758976, gi... - gi\|189354324\|gb\|EDU72743.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|13360494, gi\|... - gi\|15830288\|ref\|NP_309061.1\| paraquat-inducible protein A [Escherichia coli O157:H7], gi\|13360494\|db... gi\|25321509, gi\|... - pir\|\|H85621 paraquat-inducible protein A [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|254792150, gi... - gi\|254792150\|ref\|YP_003076987.1\| paraquat-inducible membrane protein A [Escherichia coli O157:H7 str...	0.0	[1..417]	[1..417]
gi\|56128197, gi\|... - gi\|56413940\|ref\|YP_151015.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|197094340, gi... - gi\|197362863\|ref\|YP_002142500.1\| putative inner membrane protein [Salmonella enterica subsp. enteric...	0.0	[1..417]	[1..417]
PQIA_ECOLI - Paraquat-inducible protein A - Escherichia coli EG12965 - paraquat-inducible, SoxRS-regulated inner membrane protein / Paraquat-inducible, SoxRS-regulated inn... gi\|169888443, gi... - gi\|170080608\|ref\|YP_001729928.1\| paraquat-inducible membrane protein A [Escherichia coli str. K-12 s... gi\|170020649, gi... - gi\|170020649\|ref\|YP_001725603.1\| PqiA family integral membrane protein [Escherichia coli ATCC 8739],... PQIA_ECOL6 - Paraquat-inducible protein A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pqiA ... gi\|218553537, gi... - gi\|218553537\|ref\|YP_002386450.1\| paraquat-inducible membrane protein A [Escherichia coli IAI1], gi\|2... gi\|30062487, gi\|... - gi\|30062487\|ref\|NP_836658.1\| paraquat-inducible protein A [Shigella flexneri 2a str. 2457T], gi\|3004... gi\|209918202, gi... - gi\|209918202\|ref\|YP_002292286.1\| paraquat-inducible protein A [Escherichia coli SE11], gi\|209911461\|... gi\|218351157, gi... - gi\|218694425\|ref\|YP_002402092.1\| paraquat-inducible membrane protein A [Escherichia coli 55989], gi\|... gi\|218426350, gi... - gi\|218688786\|ref\|YP_002396998.1\| paraquat-inducible membrane protein A [Escherichia coli ED1a], gi\|2... gi\|227884091, gi... - gi\|227884091\|ref\|ZP_04001896.1\| paraquat-inducible membrane protein A [Escherichia coli 83972], gi\|2... gi\|238900208, gi... - gi\|238900208\|ref\|YP_002926004.1\| paraquat-inducible membrane protein A [Escherichia coli BW2952], gi... gi\|110342731, gi... - gi\|110641139\|ref\|YP_668869.1\| paraquat-inducible protein A [Escherichia coli 536], gi\|110342731\|gb\|A... gi\|251784492, gi... - gi\|251784492\|ref\|YP_002998796.1\| hypothetical protein B21_00961 [Escherichia coli BL21], gi\|24237676... gi\|110804966, gi... - gi\|110804966\|ref\|YP_688486.1\| paraquat-inducible protein A [Shigella flexneri 5 str. 8401], gi\|11061... gi\|254287872, gi... - gi\|254287872\|ref\|YP_003053620.1\| paraquat-inducible membrane protein A [Escherichia coli BL21(DE3)],... gi\|253972965, gi... - gi\|254161064\|ref\|YP_003044172.1\| paraquat-inducible membrane protein A [Escherichia coli B str. REL6... gi\|89107800, gi\|... - gi\|89107800\|ref\|AP_001580.1\| paraquat-inducible membrane protein A [Escherichia coli str. K-12 subst... EG12965 - paraquat-inducible, SoxRS-regulated inner membrane protein / Paraquat-inducible, SoxRS-regulated inn... gi\|188493098, gi... - gi\|75510993\|ref\|ZP_00733747.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|81246137, gi\|... - gi\|82544726\|ref\|YP_408673.1\| paraquat-inducible protein A [Shigella boydii Sb227], gi\|81246137\|gb\|AB... PQIA_SHIFL - Paraquat-inducible protein A OS=Shigella flexneri GN=pqiA PE=3 SV=1 gi\|24112363, gi\|... - gi\|24112363\|ref\|NP_706873.1\| paraquat-inducible protein A [Shigella flexneri 2a str. 301], gi\|240512... PQIA_ECOL6 - Paraquat-inducible protein A OS=Escherichia coli O6 GN=pqiA PE=2 SV=1 gi\|75190019, gi\|... - gi\|75190019\|ref\|ZP_00703286.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|157066151, gi... - gi\|75195140\|ref\|ZP_00705210.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|75207995, gi\|... - gi\|75207995\|ref\|ZP_00708416.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|75229844, gi\|... - gi\|75229844\|ref\|ZP_00716367.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|190907633, gi... - gi\|75241018\|ref\|ZP_00724907.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|193064632, gi... - gi\|75257332\|ref\|ZP_00728848.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|124530104, gi... - gi\|124530104\|ref\|ZP_01700874.1\| integral membrane protein, PqiA family [Escherichia coli B], gi\|1244...	0.0	[1..417]	[1..417]
gi\|91071619, gi\|... - gi\|91210045\|ref\|YP_540031.1\| paraquat-inducible protein A [Escherichia coli UTI89], gi\|91071619\|gb\|A... gi\|218557848, gi... - gi\|218557848\|ref\|YP_002390761.1\| paraquat-inducible membrane protein A [Escherichia coli S88], gi\|21... gi\|226898277, gi... - gi\|237707067\|ref\|ZP_04537548.1\| paraquat-inducible protein A [Escherichia sp. 3_2_53FAA], gi\|2268982... gi\|117623161, gi... - gi\|117623161\|ref\|YP_852074.1\| paraquat-inducible protein A [Escherichia coli APEC O1], gi\|115512285\|...	0.0	[1..417]	[1..417]
gi\|187428005, gi... - gi\|75178236\|ref\|ZP_00698290.1\| COG2995: Uncharacterized paraquat-inducible protein A [Shigella boydi...	0.0	[1..417]	[1..417]
gi\|74311507, gi\|... - gi\|74311507\|ref\|YP_309926.1\| paraquat-inducible protein A [Shigella sonnei Ss046], gi\|73854984\|gb\|AA...	0.0	[1..417]	[1..417]
gi\|194435234, gi... - gi\|83568922\|ref\|ZP_00920390.1\| COG2995: Uncharacterized paraquat-inducible protein A [Shigella dysen...	0.0	[1..417]	[1..417]
gi\|14091176\|gb\|A... - Pqi5 [Salmonella typhimurium] gi\|14091176 - gi\|14091176\|gb\|AAK53637.1\|AF366051_1 Pqi5 [Salmonella typhimurium]	0.0	[1..417]	[1..417]
gi\|62179585, gi\|... - gi\|62179585\|ref\|YP_216002.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica serov...	0.0	[1..417]	[1..417]
gi\|229843502, gi... - gi\|229843502\|ref\|ZP_04463648.1\| paraquat-inducible membrane protein A [Yersinia pestis biovar Orient... gi\|229841396, gi... - gi\|229841396\|ref\|ZP_04461555.1\| paraquat-inducible membrane protein A [Yersinia pestis biovar Orient... gi\|229895876, gi... - gi\|229895876\|ref\|ZP_04511046.1\| paraquat-inducible membrane protein A [Yersinia pestis Pestoides A],... gi\|149291051, gi... - gi\|149366677\|ref\|ZP_01888711.1\| putative paraquat-inducible protein A [Yersinia pestis CA88-4125], g... gi\|108778625, gi... - gi\|108806712\|ref\|YP_650628.1\| paraquat-inducible protein A [Yersinia pestis Antiqua], gi\|108778625\|g... gi\|186697891, gi... - gi\|186894865\|ref\|YP_001871977.1\| PqiA family integral membrane protein [Yersinia pseudotuberculosis ... gi\|21959636, gi\|... - gi\|22126626\|ref\|NP_670049.1\| paraquat-inducible protein A [Yersinia pestis KIM], gi\|21959636\|gb\|AAM8... gi\|25321513 - pir\|\|AF0173 probable paraquat-inducible protein A pqiA [imported] - Yersinia pestis (strain CO92) gi\|108812718, gi... - gi\|229903118\|ref\|ZP_04518231.1\| paraquat-inducible membrane protein A [Yersinia pestis Nepal516], gi... gi\|15979469, gi\|... - gi\|218928568\|ref\|YP_002346443.1\| putative paraquat-inducible protein A [Yersinia pestis CO92], gi\|16... gi\|167399811, gi... - gi\|167399811\|ref\|ZP_02305329.1\| paraquat-inducible protein A [Yersinia pestis biovar Antiqua str. UG... gi\|45435859, gi\|... - gi\|45441000\|ref\|NP_992539.1\| paraquat-inducible protein A [Yersinia pestis biovar Microtus str. 9100... gi\|167419698, gi... - gi\|167419698\|ref\|ZP_02311451.1\| paraquat-inducible protein A [Yersinia pestis biovar Orientalis str.... gi\|167424194, gi... - gi\|167424194\|ref\|ZP_02315947.1\| paraquat-inducible protein A [Yersinia pestis biovar Mediaevalis str... gi\|167470420 - gi\|167470420\|ref\|ZP_02335124.1\| paraquat-inducible protein A [Yersinia pestis FV-1] gi\|165923699, gi... - gi\|165924639\|ref\|ZP_02220471.1\| paraquat-inducible protein A [Yersinia pestis biovar Orientalis str.... gi\|165913143, gi... - gi\|165938996\|ref\|ZP_02227549.1\| paraquat-inducible protein A [Yersinia pestis biovar Orientalis str.... gi\|165990739, gi... - gi\|166010253\|ref\|ZP_02231151.1\| paraquat-inducible protein A [Yersinia pestis biovar Antiqua str. E1... gi\|166211725, gi... - gi\|166211725\|ref\|ZP_02237760.1\| paraquat-inducible protein A [Yersinia pestis biovar Antiqua str. B4... gi\|162354156, gi... - gi\|162421341\|ref\|YP_001606462.1\| paraquat-inducible protein A [Yersinia pestis Angola], gi\|162354156...	0.0	[6..416]	[12..422]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEHHHAAKH ILCPQCDMLV ALPRLSHGQK AACPRCGATL TTEWDAPRQR PTAYALAALF  60
   61 MLLLSNLFPF VNMNVAGVTS EVTLLEIPGV MFSEDYASLG TFFLLFVQLV PAFCLVTILL 120
  121 LVNRASLPLS VKKTLARIFF LLKSWGMAEI FLAGVLVSFV KLMAYGDIGI GSSFIPWCLF 180
  181 CLVQLRAFQC VDRRWLWDDI APQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [204-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PALAQPLTPG ITGIRQSLRS CACCTAILPA ESLVCPRCHT KGYVRRKNSL QWTLALLFTS  60
   61 IMLYLPANIL PIMITDLLGS KMPSTILAGV ILLWSEGSYP VAAVIFLASI MVPTLKMIAI 120
  121 AWLCWDAKGH GKRDSERMHF IYEVVEFVGR WSMIDVFVIA VLSALVRMGG LMNIYPAMGA 180
  181 LMFALVVIMT MFSAMTFDPR LSWDREYEPG HEES

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	103.657577
Match:	PF04403.4
Description:	No description for PF04403.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits