YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29137990, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29137990, gi|....

Description	E-value	Query Range	Subject Range
gi\|205346904, gi... - gi\|205346904\|gb\|EDZ33535.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Hada... gi\|168243767, gi... - gi\|205337174\|gb\|EDZ23938.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Heid... gi\|205327270, gi... - gi\|205327270\|gb\|EDZ14034.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar 4,[5... gi\|205322469, gi... - gi\|205322469\|gb\|EDZ10308.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Sain... AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1 AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1 AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=aspC P... gi\|207856389, gi... - gi\|207856389\|ref\|YP_002243040.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... lcl\|NC_016856.1_... - [gene=aspC] [protein=aromatic amino acid aminotransferase] [protein_id=YP_005236718.1] [location=com... gi\|197250328, gi... - gi\|197250328\|ref\|YP_002145916.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|194450741, gi... - gi\|194450741\|ref\|YP_002044990.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|194404393, gi... - gi\|194445730\|ref\|YP_002040196.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|205341503, gi... - gi\|205341503\|gb\|EDZ28267.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Welt... gi\|205271986, gi... - gi\|205352205\|ref\|YP_002226006.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|204930064, gi... - gi\|204930064\|ref\|ZP_03221085.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar ... gi\|197936495, gi... - gi\|198241979\|ref\|YP_002214922.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|197262193, gi... - gi\|197262193\|ref\|ZP_03162267.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar ...	7.0E-93	[1..396]	[1..396]
gi\|197362876, gi... - gi\|197362876\|ref\|YP_002142513.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|56413953, gi\|... - gi\|56413953\|ref\|YP_151028.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri...	1.0E-92	[1..396]	[1..396]
AATM_MOUSE - Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1	1.0E-92	[2..395]	[33..428]
gi\|62127158, gi\|... - gi\|62179525\|ref\|YP_215942.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri...	1.0E-92	[1..396]	[1..396]
gi\|223867 - gi\|223867\|prf\|\|1003180A aminotransferase,Asp	4.0E-92	[2..395]	[4..399]
gi\|39585804, gi\|... - gi\|39585804\|emb\|CAE61217.1\| Hypothetical protein CBG05011 [Caenorhabditis briggsae], gi\|187035275\|em... gi\|157770111 - gi\|157770111\|ref\|XP_001676876.1\| Hypothetical protein CBG05011 [Caenorhabditis briggsae AF16]	6.0E-92	[2..395]	[18..412]
gi\|192927666, gi... - gi\|75257355\|ref\|ZP_00728871.1\| COG1448: Aspartate/tyrosine/aromatic aminotransferase [Escherichia co...	6.0E-92	[1..396]	[1..396]

Back

Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFENITAAPA DPILGLADLF RADDRPGKIN LGIGVYKDET GKTPVLTSVK KAEQYLLENE  60
   61 TTKNYLGIDG IPEFARCTQE LLFGKGSALI NDKRARTAQT PGGTGALRIA ADFLAKNTPV 120
  121 KRVWVSNPSW PNHKSVFNAA GLEVREYAYY DAENHSLDFE ALQASLSEAQ AGDVVLFHGC 180
  181 CHNPTGIDPT LEQWQVLAEL SVEKGWLPLF DFAYQGFARG LEEDAEGLRA FAALHKELIV 240
  241 ASSYSKNFGL YNERVGACTL VAADAETVDR AFSQMKSAIR ANYSNPPAHG ASIVATILSN 300
  301 DALRAIWEQE LTDMRQRIQR MRQLFVNTLQ EKGANRDFSF IIKQNGMFSF SGLTKDQVLR 360
  361 LREEFGVYAV ASGRVNVAGM TPDNMAPLCE AIVAVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.39794
Match:	1aawA
Description:	THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits