YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29142390, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29142390, gi|....

Description	E-value	Query Range	Subject Range
gi\|115512204, gi... - gi\|117623080\|ref\|YP_851993.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli APE...	2.0E-66	[1..287]	[22..308]
gi\|192955949, gi... - gi\|75234421\|ref\|ZP_00718782.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli E110019], gi...	2.0E-63	[1..287]	[1..287]
gi\|238860774, gi... - gi\|238900154\|ref\|YP_002925950.1\| dimethyl sulfoxide reductase, anaerobic, subunit C [Escherichia col... EG10234 - dimethyl sulfoxide reductase, anaerobic, subunit C / DMSO reductase subunit C, periplasmic; has a me... EG10234 - dimethyl sulfoxide reductase, anaerobic, subunit C / DMSO reductase subunit C, periplasmic; has a me... DMSC_ECOLI - Anaerobic dimethyl sulfoxide reductase chain C (DMSO reductase anchor subunit) - Escherichia coli gi\|83585839, gi\|... - gi\|83585839\|ref\|ZP_00924479.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli 101-1], gi\|1... gi\|187428614, gi... - gi\|75178299\|ref\|ZP_00698353.1\| COG3302: DMSO reductase anchor subunit [Shigella boydii BS512], gi\|18... gi\|75195084, gi\|... - gi\|75195084\|ref\|ZP_00705154.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli HS], gi\|1571... gi\|188488578, gi... - gi\|75512049\|ref\|ZP_00734634.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli 53638], gi\|1... gi\|170020702, gi... - gi\|170020702\|ref\|YP_001725656.1\| DMSO reductase anchor subunit (DmsC) [Escherichia coli ATCC 8739], ... gi\|169888389, gi... - gi\|170080554\|ref\|YP_001729874.1\| dimethyl sulfoxide reductase, anaerobic, subunit C [Escherichia col... gi\|218351101, gi... - gi\|218694369\|ref\|YP_002402036.1\| dimethyl sulfoxide reductase, anaerobic, subunit C [Escherichia col... gi\|1651423, gi\|8... - gi\|89107746\|ref\|AP_001526.1\| dimethyl sulfoxide reductase, anaerobic, subunit C [Escherichia coli st... gi\|124531979, gi... - gi\|124531979\|ref\|ZP_01702038.1\| DMSO reductase anchor subunit (DmsC) [Escherichia coli B], gi\|124498...	2.0E-63	[1..287]	[1..287]
gi\|208816262, gi... - gi\|208816262\|ref\|ZP_03257441.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli ... gi\|208728153, gi... - gi\|208808352\|ref\|ZP_03250689.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli ... gi\|209398884, gi... - gi\|209398884\|ref\|YP_002269569.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli... gi\|208738153, gi... - gi\|208822668\|ref\|ZP_03262987.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli ... gi\|217324171, gi... - gi\|217324171\|ref\|ZP_03440255.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli... gi\|209918145, gi... - gi\|209918145\|ref\|YP_002292229.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli ... gi\|168762970, gi... - gi\|189366821\|gb\|EDU85237.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|189355946, gi... - gi\|189355946\|gb\|EDU74365.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|25324039, gi\|... - pir\|\|C85615 hypothetical protein dmsC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|187768363, gi... - gi\|187768363\|gb\|EDU32207.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|168769889, gi... - gi\|189361180\|gb\|EDU79599.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|15800759, gi\|... - gi\|15800759\|ref\|NP_286773.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli O157... gi\|168787324, gi... - gi\|189372697\|gb\|EDU91113.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|13360440, gi\|... - gi\|15830235\|ref\|NP_309008.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli O157... gi\|168783806, gi... - gi\|188998911\|gb\|EDU67897.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|195939559 - gi\|195939559\|ref\|ZP_03084941.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli O... gi\|189376454, gi... - gi\|189376454\|gb\|EDU94870.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O15... gi\|254792096, gi... - gi\|254792096\|ref\|YP_003076933.1\| dimethyl sulfoxide reductase, anaerobic, subunit C [Escherichia col... gi\|192927725, gi... - gi\|75257389\|ref\|ZP_00728905.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli E22], gi\|193... gi\|190902366, gi... - gi\|75229264\|ref\|ZP_00715829.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli B7A], gi\|191... gi\|13360440, gi\|... - gi\|15830235\|ref\|NP_309008.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli O157... gi\|75210415, gi\|... - gi\|75210415\|ref\|ZP_00710571.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli B171], gi\|19... gi\|168752122, gi... - gi\|188013960\|gb\|EDU52082.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Escherichia coli O157... gi\|75189936, gi\|... - gi\|75189936\|ref\|ZP_00703203.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli E24377A], gi...	3.0E-63	[1..287]	[1..287]
gi\|75240973, gi\|... - gi\|75240973\|ref\|ZP_00724862.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli F11], gi\|191... gi\|110641096, gi... - gi\|110641096\|ref\|YP_668826.1\| anaerobic dimethyl sulfoxide reductase, subunit C [Escherichia coli 53...	4.0E-63	[1..287]	[1..287]
gi\|21957599, gi\|... - gi\|22124777\|ref\|NP_668200.1\| anaerobic dimethyl sulfoxide reductase chain C [Yersinia pestis KIM], g... gi\|45440220, gi\|... - gi\|45440220\|ref\|NP_991759.1\| anaerobic dimethyl sulfoxide reductase chain C [Yersinia pestis biovar ...	4.0E-63	[1..286]	[22..306]
gi\|74311454, gi\|... - gi\|74311454\|ref\|YP_309873.1\| anaerobic dimethyl sulfoxide reductase subunit C [Shigella sonnei Ss046...	6.0E-63	[1..287]	[1..287]
gi\|91071573, gi\|... - gi\|91209999\|ref\|YP_539985.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli UTI8... gi\|218557804, gi... - gi\|218557804\|ref\|YP_002390717.1\| dimethyl sulfoxide reductase, anaerobic, subunit C [Escherichia col... gi\|218688739, gi... - gi\|218688739\|ref\|YP_002396951.1\| dimethyl sulfoxide reductase, anaerobic, subunit C [Escherichia col... gi\|237707114, gi... - gi\|237707114\|ref\|ZP_04537595.1\| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia sp. 3_...	6.0E-63	[1..287]	[1..287]
gi\|82777583, gi\|... - gi\|82777583\|ref\|YP_403932.1\| anaerobic dimethyl sulfoxide reductase subunit C [Shigella dysenteriae ...	7.0E-63	[1..287]	[1..287]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGWHEWPL MIFTVFGQCV AGGFIVLALA LMKGDLRAET QQRVIACMFG LWVLMGIGFI  60
   61 ASMLHLGSPM RAFNSLNRVG ASALSNEIAS GSVFFAVGGI GWLLAVLKKL PPALRTLWLI 120
  121 ITMVLGVVFV WMMVRVYNSI DTVPTWYSVW TPLGFFLTLF MGGPLLGYLL LRIAGVNGWA 180
  181 MRLLPAVSVL ALVVI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [196-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIMVAMQGAE LATIHSSIQQ ASALVPDYGS LMAWRMVLLA AALCCWIVPQ LKGYQPAVPL  60
   61 LSVAFILMLA GELIGRGVFY GLHMTVGMAV AS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits