YRC Public Data Repository - Protein Structure Prediction

Protein:	DHSC_SALTI
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHSC_SALTI.

Description	E-value	Query Range	Subject Range
gi\|49077638 - gi\|49077638\|gb\|AAT49701.1\| PA1581 [synthetic construct]	1.0E-31	[1..129]	[1..128]
gi\|29418059 - gi\|29418059\|gb\|AAO39685.1\| succinate dehydrogenase cytochrome b-556 subunit; SdhC [Enterobacter cloa...	1.0E-31	[1..129]	[31..159]
gi\|194545667, gi... - gi\|254234682\|ref\|ZP_04928005.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa C3719], ... gi\|115584747, gi... - gi\|116049526\|ref\|YP_791670.1\| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas aerugino... gi\|218772688, gi... - gi\|218892462\|ref\|YP_002441329.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa LESB58]... gi\|254239930, gi... - gi\|254239930\|ref\|ZP_04933252.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 2192], g... gi\|11352600 - pir\|\|C83448 succinate dehydrogenase (C subunit) PA1581 [imported] - Pseudomonas aeruginosa (strain P... gi\|9947544, gi\|1... - gi\|9947544\|gb\|AAG04970.1\|AE004586_8 succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa PAO1...	2.0E-31	[1..129]	[1..128]
gi\|83372565, gi\|... - gi\|83372565\|ref\|ZP_00917345.1\| similar to Succinate dehydrogenase/fumarate reductase cytochrome b su...	9.0E-31	[1..128]	[38..164]
gi\|82775989, gi\|... - gi\|82775989\|ref\|YP_402336.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Shigell... gi\|81244559, gi\|... - gi\|82543148\|ref\|YP_407095.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Shigell... gi\|74311245, gi\|... - gi\|74311245\|ref\|YP_309664.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Shigell... DHSC_ECOLI - Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556) - Escherichia coli gi\|218694145, gi... - gi\|218694145\|ref\|YP_002401812.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Esc... gi\|218704038, gi... - gi\|218704038\|ref\|YP_002411557.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Esc... DHSC_ECO57 - Succinate dehydrogenase cytochrome b556 subunit OS=Escherichia coli O157:H7 GN=sdhC PE=3 SV=1 EG10933 - succinate dehydrogenase, membrane subunit, binds cytochrome b556 / Succinate dehydrogenase (SQR) cyt... gi\|12513636, gi\|... - gi\|15800425\|ref\|NP_286437.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Escheri... gi\|253972692, gi... - gi\|254160791\|ref\|YP_003043899.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Esc... gi\|254287579, gi... - gi\|254287579\|ref\|YP_003053327.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Esc... gi\|238899986, gi... - gi\|238899986\|ref\|YP_002925782.1\| succinate dehydrogenase, membrane subunit, binds cytochrome b556 [E... gi\|169888223, gi... - gi\|170080388\|ref\|YP_001729708.1\| succinate dehydrogenase, membrane subunit, binds cytochrome b556 [E... gi\|242376483, gi... - gi\|251784210\|ref\|YP_002998514.1\| hypothetical protein B21_00670 [Escherichia coli BL21], gi\|24237648... gi\|89107579, gi\|... - gi\|89107579\|ref\|AP_001359.1\| succinate dehydrogenase, membrane subunit, binds cytochrome b556 [Esche... gi\|254591267, gi... - gi\|254791867\|ref\|YP_003076704.1\| succinate dehydrogenase, membrane subunit, binds cytochrome b556 [E... gi\|13360204, gi\|... - gi\|15830000\|ref\|NP_308773.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Escheri... EG10933 - succinate dehydrogenase, membrane subunit, binds cytochrome b556 / Succinate dehydrogenase (SQR) cyt...	2.0E-30	[1..129]	[1..129]
gi\|161485938 - gi\|161485938\|ref\|NP_706513.2\| succinate dehydrogenase cytochrome b556 large membrane subunit [Shigel... gi\|161486531 - gi\|161486531\|ref\|NP_836287.2\| succinate dehydrogenase cytochrome b556 large membrane subunit [Shigel... gi\|110614199, gi... - gi\|110804651\|ref\|YP_688171.1\| succinate dehydrogenase cytochrome b556 large membrane subunit [Shigel...	2.0E-30	[1..129]	[1..129]
gi\|77972472 - gi\|77972472\|ref\|ZP_00828037.1\| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b sub...	4.0E-30	[3..129]	[10..136]
gi\|77866289, gi\|... - gi\|77954807\|ref\|ZP_00819193.1\| similar to Succinate dehydrogenase/fumarate reductase cytochrome b su...	8.0E-30	[4..129]	[50..174]
gi\|25520736 - pir\|\|F97676 succinate dehydrogenase membrane anchor chain (AF007569) [imported] - Agrobacterium tume... gi\|15889901, gi\|... - gi\|15889901\|ref\|NP_355582.1\| hypothetical protein AGR_C_4794 [Agrobacterium tumefaciens str. C58], g...	1.0E-29	[1..128]	[35..161]
gi\|77961518 - gi\|77961518\|ref\|ZP_00825353.1\| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b sub...	2.0E-29	[3..129]	[10..136]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNVKKQRP VNLDLQTIRF PITAIASILH RVSGVITFIA VGILLWLLGT SLSSPEGFQQ  60
   61 AADIMDGFIV KFIMWGILTA LAYHVIVGIR HMLMDFGYLE ETFEAGQRSA KISFVITVVL 120
  121 SLLAGVLVW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1nekC
Description:	Succinate dehydrogenase subunit SdhC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.6133558935785	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.24661342841192	bayes_pls_golite062009
oxidoreductase activity	5.99989196344185	bayes_pls_golite062009
electron carrier activity	4.50772505551128	bayes_pls_golite062009
binding	1.1076219212629	bayes_pls_golite062009
catalytic activity	0.971825536251904	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: