YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25296373, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25296373, gi|....

Description	E-value	Query Range	Subject Range
gi\|224582500, gi... - gi\|224582500\|ref\|YP_002636298.1\| ABC transporter periplasmic binding protein [Salmonella enterica su... gi\|62126896, gi\|... - gi\|62179263\|ref\|YP_215680.1\| glutamate and aspartate transporter subunit [Salmonella enterica subsp....	2.0E-66	[1..308]	[1..308]
gi\|16764042, gi\|... - gi\|16764042\|ref\|NP_459657.1\| glutamate and aspartate transporter subunit [Salmonella typhimurium LT2... gi\|197363130, gi... - gi\|197363130\|ref\|YP_002142767.1\| glutamate and aspartate transporter subunit [Salmonella enterica su... gi\|56414206, gi\|... - gi\|56414206\|ref\|YP_151281.1\| glutamate and aspartate transporter subunit [Salmonella enterica subsp....	3.0E-66	[1..308]	[1..308]
gi\|205347107, gi... - gi\|205347107\|gb\|EDZ33738.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|168465842, gi... - gi\|195631794\|gb\|EDX50314.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|168820210, gi... - gi\|205343265\|gb\|EDZ30029.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|194402004, gi... - gi\|194443341\|ref\|YP_002039908.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartat... gi\|161364481, gi... - gi\|161615117\|ref\|YP_001589082.1\| glutamate and aspartate transporter subunit [Salmonella enterica su... gi\|167550797, gi... - gi\|205324274\|gb\|EDZ12113.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|168231680, gi... - gi\|205334029\|gb\|EDZ20793.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... GLTI_SALTY - Glutamate/aspartate import solute-binding protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 /... GLTI_SALTY - Glutamate/aspartate periplasmic-binding protein OS=Salmonella typhimurium GN=gltI PE=3 SV=3 gi\|200389609, gi... - gi\|200389609\|ref\|ZP_03216220.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate... gi\|238911616 - gi\|238911616\|ref\|ZP_04655453.1\| glutamate and aspartate transporter subunit [Salmonella enterica sub... GLTI_SALTY - Glutamate/aspartate periplasmic-binding protein OS=Salmonella typhimurium GN=gltI PE=3 SV=3 gi\|194469057, gi... - gi\|194469057\|ref\|ZP_03075041.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate... gi\|197248012, gi... - gi\|197248012\|ref\|YP_002145641.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartat... gi\|197240638, gi... - gi\|197262383\|ref\|ZP_03162457.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate... gi\|197936432, gi... - gi\|198241916\|ref\|YP_002214653.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartat...	4.0E-64	[7..308]	[1..302]
gi\|83652241, gi\|... - gi\|83718416\|ref\|YP_441772.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bi...	8.0E-61	[6..308]	[1..298]
gi\|84360756 - gi\|84360756\|ref\|ZP_00985448.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	1.0E-60	[17..308]	[6..297]
gi\|11351116 - pir\|\|D83010 probable binding protein component of ABC transporter PA5082 [imported] - Pseudomonas ae... gi\|53726608, gi\|... - gi\|53726608\|ref\|ZP_00141557.2\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|9951376, gi\|1... - gi\|9951376\|gb\|AAG08467.1\|AE004921_4 probable binding protein component of ABC transporter [Pseudomon...	2.0E-60	[9..303]	[1..294]
gi\|84356699 - gi\|84356699\|ref\|ZP_00981535.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	2.0E-60	[17..308]	[6..297]
gi\|134294747, gi... - gi\|67546192\|ref\|ZP_00424108.1\| extracellular solute-binding protein, family 3 [Burkholderia vietnami...	2.0E-60	[17..308]	[6..297]
gi\|82528360 - gi\|82528360\|ref\|ZP_00887638.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|67648644 - gi\|67648644\|ref\|ZP_00446872.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|99912835, gi\|... - gi\|99912835\|ref\|ZP_01319533.1\| hypothetical protein Bpse1_03001100 [Burkholderia pseudomallei 1655],... gi\|82534147, gi\|... - gi\|90661782\|ref\|ZP_01249620.1\| hypothetical protein Bpse110_02006346 [Burkholderia pseudomallei 1106... gi\|83680078, gi\|... - gi\|83680078\|ref\|ZP_00941786.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|67753090, gi\|... - gi\|67753090\|ref\|ZP_00492038.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|67761741, gi\|... - gi\|67761741\|ref\|ZP_00500447.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|90293285, gi\|... - gi\|90293285\|ref\|ZP_01212887.1\| hypothetical protein Bpse17_02001934 [Burkholderia pseudomallei 1710a... gi\|67737576 - gi\|67737576\|ref\|ZP_00488325.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|85065585 - gi\|85065585\|ref\|ZP_01026438.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|87313904, gi\|... - gi\|87313904\|ref\|ZP_01094968.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	2.0E-60	[18..308]	[1..291]
gi\|53720532, gi\|... - gi\|53720532\|ref\|YP_109518.1\| glutamate/aspartate periplasmic binding protein precursor [Burkholderia...	2.0E-60	[9..308]	[1..300]

Back

Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKELDMQLR KLTTAMLVMG LSAGLAHAED GAPAAGSTLD KIAKNGVIVV GHRESSVPFS  60
   61 YYDNQQKVVG YSQDYSNAIV EVVKKKLNKP DLQVKLIPIT SQNRIPLLQN GTFDFECGST 120
  121 TNNLERQKQA AFSDTIFVVG TRLLTKKGGD IKDFPDLKGK AVVVTSGTTS EILLHKLNEE 180
  181 QKMGMRIISA KDHGDSFRTL ESGRAVAFMM DDALLAGERA KAKKPDNWEI VGKPQSQEAY 240
  241 GCMLRKNDPE FKKLMDDTIA QAQTSGEAEK WFDKWFKNPI PPKNLNMNFE LSDEMKALFK 300
  301 APNDKALN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	2ia4A
Description:	No description for 2ia4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits