YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16501684, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16501684, gi|....

Description	E-value	Query Range	Subject Range
gi\|75176888, gi\|... - gi\|75176888\|ref\|ZP_00697004.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Shigella boyd...	0.0	[1..367]	[1..367]
gi\|238899702, gi... - gi\|238899702\|ref\|YP_002925498.1\| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-a... EG11321 - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) ur... gi\|85674554, gi\|... - gi\|89107284\|ref\|AP_001064.1\| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amin... EG11321 - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) ur... gi\|170080000, gi... - gi\|170080000\|ref\|YP_001729320.1\| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-a... RIBD_ECOLI - Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminas...	0.0	[1..367]	[1..367]
gi\|81244313, gi\|... - gi\|82542902\|ref\|YP_406849.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	0.0	[1..367]	[1..367]
gi\|75237204 - gi\|75237204\|ref\|ZP_00721251.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	0.0	[7..367]	[1..361]
gi\|75230139 - gi\|75230139\|ref\|ZP_00716643.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	0.0	[7..367]	[1..361]
gi\|75512475 - gi\|75512475\|ref\|ZP_00735014.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c... gi\|83585667 - gi\|83585667\|ref\|ZP_00924309.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	0.0	[7..367]	[1..361]
gi\|75194633 - gi\|75194633\|ref\|ZP_00704703.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	0.0	[7..367]	[1..361]
gi\|75189481 - gi\|75189481\|ref\|ZP_00702748.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	0.0	[7..367]	[1..361]
gi\|74310983, gi\|... - gi\|74310983\|ref\|YP_309402.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	0.0	[1..367]	[1..367]
gi\|226898802, gi... - gi\|237707592\|ref\|ZP_04538073.1\| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia s... gi\|117622675, gi... - gi\|117622675\|ref\|YP_851588.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-a... gi\|91209482, gi\|... - gi\|91209482\|ref\|YP_539468.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|218364092, gi... - gi\|218557323\|ref\|YP_002390236.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/...	0.0	[1..367]	[1..367]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDEFYMARA LKLAQRGRFT THPNPNVGCV IVNNGDIVGE GYHHRAGEPH AEVHALRMAG  60
   61 AKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVAAM QDPNPQVAGR GLYRLQQAGI 120
  121 AVSHGLMMSE AEALNKGFLK RMRTGFPYLQ LKLGASVDGR TAMASGESQW ITSPQARRDV 180
  181 QRLRAQSHAI LTSSATVLAD DPALTVRWAE LDASTQASYP QENLRQPVRI VIDSQNRVTP 240
  241 AHRIVQQPGE TWIARTQEDS HAWPDSVRTI SVPAHNGHLD LVVLMMQLGR QQINSIWVEA 300
  301 GPGLAGALLQ AGLVDELIVY VAPKLLGTQA RGLCELPGLE KLADAPQFTF SEIRHVGPDV 360
  361 CLHMVSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	2g6vA
Description:	No description for 2g6vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits