YRC Public Data Repository - Protein Structure Prediction

Protein:	DDLA_SALTY
Organism:	Salmonella typhimurium
Length:	364 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDLA_SALTY.

Description	E-value	Query Range	Subject Range
gi\|62178991, gi\|... - gi\|62178991\|ref\|YP_215408.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica sero... gi\|161364805, gi... - gi\|161615441\|ref\|YP_001589406.1\| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica ...	1.0E-78	[1..364]	[1..364]
gi\|187731227, gi... - gi\|75176852\|ref\|ZP_00696968.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Sh...	3.0E-77	[1..364]	[1..364]
gi\|188487411, gi... - gi\|75512440\|ref\|ZP_00734979.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es...	3.0E-77	[1..364]	[1..364]
gi\|191173486, gi... - gi\|75238709\|ref\|ZP_00722697.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|218557291, gi... - gi\|218557291\|ref\|YP_002390204.1\| D-alanyl-alanine synthetase A [Escherichia coli S88], gi\|218364060\|... DDLA_ECOL6 - D-alanine--D-alanine ligase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ddlA... gi\|237707631, gi... - gi\|237707631\|ref\|ZP_04538112.1\| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA], gi\|226898... gi\|227884616, gi... - gi\|227884616\|ref\|ZP_04002421.1\| D-alanyl-alanine synthetase A [Escherichia coli 83972], gi\|227838702... DDLA_ECOL6 - D-alanine--D-alanine ligase A OS=Escherichia coli O6 GN=ddlA PE=3 SV=1 gi\|91209444, gi\|... - gi\|91209444\|ref\|YP_539430.1\| D-alanyl-alanine synthetase A [Escherichia coli UTI89], gi\|91071018\|gb\|... gi\|110640642, gi... - gi\|110640642\|ref\|YP_668370.1\| D-alanyl-alanine synthetase A [Escherichia coli 536], gi\|110342234\|gb\|... gi\|117622644, gi... - gi\|117622644\|ref\|YP_851557.1\| D-alanyl-alanine synthetase A [Escherichia coli APEC O1], gi\|115511768...	4.0E-77	[1..364]	[1..364]
gi\|13359888, gi\|... - gi\|15829685\|ref\|NP_308458.1\| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai], gi... EG10213 - D-alanine-D-alanine ligase A / D-alanine:D-alanine ligase A, ADP-forming EG10213 - D-alanine-D-alanine ligase A / D-alanine:D-alanine ligase A, ADP-forming gi\|187768284, gi... - gi\|187768284\|gb\|EDU32128.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4196], gi... gi\|12513221, gi\|... - gi\|15800107\|ref\|NP_286119.1\| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 EDL933], gi\|125... gi\|189362532, gi... - gi\|189362532\|gb\|EDU80951.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4486], gi... gi\|189377439, gi... - gi\|189377439\|gb\|EDU95855.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508], gi\|... gi\|168783231, gi... - gi\|188999359\|gb\|EDU68345.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4076], gi... gi\|170079968, gi... - gi\|170079968\|ref\|YP_001729288.1\| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. DH... gi\|169756174, gi... - gi\|170021246\|ref\|YP_001726200.1\| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739], gi\|1697... gi\|195938560 - gi\|195938560\|ref\|ZP_03083942.1\| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. EC4024] gi\|170684315, gi... - gi\|170684315\|ref\|YP_001742513.1\| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5], gi\|170522... gi\|188015916, gi... - gi\|188015916\|gb\|EDU54038.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4113], gi... gi\|189368055, gi... - gi\|189368055\|gb\|EDU86471.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4501], gi... gi\|189355976, gi... - gi\|189355976\|gb\|EDU74395.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4401], gi... gi\|218698715, gi... - gi\|218698715\|ref\|YP_002406344.1\| D-alanyl-alanine synthetase A [Escherichia coli IAI39], gi\|21836870... gi\|218350572, gi... - gi\|218693840\|ref\|YP_002401507.1\| D-alanyl-alanine synthetase A [Escherichia coli 55989], gi\|21835057... gi\|238899671, gi... - gi\|238899671\|ref\|YP_002925467.1\| D-alanine-D-alanine ligase A [Escherichia coli BW2952], gi\|23886072... gi\|124528906, gi... - gi\|124528906\|ref\|ZP_01700091.1\| D-alanine--D-alanine ligase [Escherichia coli B], gi\|124500243\|gb\|EA... gi\|253774637, gi... - gi\|254287250\|ref\|YP_003052998.1\| D-alanylalanine synthetase [Escherichia coli BL21(DE3)], gi\|2539765... gi\|254160447, gi... - gi\|254160447\|ref\|YP_003043555.1\| D-alanylalanine synthetase [Escherichia coli B str. REL606], gi\|253... gi\|157159898, gi... - gi\|75194601\|ref\|ZP_00704671.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|208732185, gi... - gi\|208815537\|ref\|ZP_03256716.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4045]... gi\|254791557, gi... - gi\|254791557\|ref\|YP_003076394.1\| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. TW14359... gi\|194428839, gi... - gi\|75209938\|ref\|ZP_00710127.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|208728784, gi... - gi\|208808983\|ref\|ZP_03251320.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4206]... gi\|194422163, gi... - gi\|83585699\|ref\|ZP_00924341.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|209161111, gi... - gi\|209399711\|ref\|YP_002269017.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4115... gi\|157155036, gi... - gi\|75189449\|ref\|ZP_00702716.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|208822855, gi... - gi\|208822855\|ref\|ZP_03263173.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4042]... DDLA_ECOLI - D-alanine--D-alanine ligase A (EC 6.3.2.4) (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) - E... DDLA_SHIFL - D-alanine--D-alanine ligase A OS=Shigella flexneri GN=ddlA PE=3 SV=1 gi\|75256754, gi\|... - gi\|75256754\|ref\|ZP_00728359.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|215485463, gi... - gi\|215485463\|ref\|YP_002327894.1\| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str. E2348/... gi\|24050453, gi\|... - gi\|24111677\|ref\|NP_706187.1\| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301], gi\|24050... gi\|85674522, gi\|... - gi\|89107252\|ref\|AP_001032.1\| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. W3110]... gi\|209917592, gi... - gi\|209917592\|ref\|YP_002291676.1\| D-alanyl-alanine synthetase A [Escherichia coli SE11], gi\|209910851... gi\|30061806, gi\|... - gi\|30061806\|ref\|NP_835977.1\| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T], gi\|300... gi\|190903247, gi... - gi\|75230107\|ref\|ZP_00716611.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|218552941, gi... - gi\|218552941\|ref\|YP_002385854.1\| D-alanyl-alanine synthetase A [Escherichia coli IAI1], gi\|218359709... DDLA_ECO57 - D-alanine--D-alanine ligase A OS=Escherichia coli O157:H7 GN=ddlA PE=3 SV=1 gi\|192958036, gi... - gi\|75237237\|ref\|ZP_00721284.1\| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Es... gi\|217326355, gi... - gi\|217326355\|ref\|ZP_03442439.1\| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. TW14588...	5.0E-77	[1..364]	[1..364]
DDL_BACSK - D-alanine--D-alanine ligase OS=Bacillus clausii (strain KSM-K16) GN=ddl PE=3 SV=1	6.0E-77	[1..364]	[1..364]
gi\|81239869, gi\|... - gi\|82775721\|ref\|YP_402068.1\| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197], gi\|81239869...	7.0E-77	[1..364]	[1..364]
gi\|74310948, gi\|... - gi\|74310948\|ref\|YP_309367.1\| D-alanyl-alanine synthetase A [Shigella sonnei Ss046], gi\|73854425\|gb\|A...	2.0E-76	[1..364]	[1..364]
gi\|82542872, gi\|... - gi\|82542872\|ref\|YP_406819.1\| D-alanyl-alanine synthetase A [Shigella boydii Sb227], gi\|81244283\|gb\|A...	3.0E-76	[1..364]	[1..364]
DDLA_CHRVO - D-alanine--D-alanine ligase A OS=Chromobacterium violaceum GN=ddlA PE=3 SV=1 DDLA_CHRVO - D-alanine--D-alanine ligase A OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249...	3.0E-76	[1..361]	[1..361]

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Predicted Domain #1

Region A:
Residues: [1-364]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLRVGIVF GGKSAEHEVS LQSAKNIVDA IDKTRFDVVL LGIDKAGQWH VNDAENYLQN  60
   61 ADDPAHIALR PSAISLAQVP GKHQHQLINA QNGQPLPTVD VIFPIVHGTL GEDGSLQGML 120
  121 RVANLPFVGS DVLSSAACMD KDVAKRLLRD AGLNIAPFIT LTRTNRHAFS FAEVESRLGL 180
  181 PLFVKPANQG SSVGVSKVAN EAQYQQAVAL AFEFDHKVVV EQGIKGREIE CAVLGNDNPQ 240
  241 ASTCGEIVLN SEFYAYDTKY IDDNGAQVVV PAQIPSEVND KIRAIAIQAY QTLGCAGMAR 300
  301 VDVFLTADNE VVINEINTLP GFTNISMYPK LWQASGLGYT DLISRLIELA LERHTANNAL 360
  361 KTTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	2i87A
Description:	No description for 2i87A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits