YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29142913, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29142913, gi|....

Description	E-value	Query Range	Subject Range
CRL_SALCH - Sigma factor-binding protein Crl OS=Salmonella choleraesuis (strain SC-B67) GN=crl PE=3 SV=1 CRL_SALCH - Sigma factor-binding protein crl OS=Salmonella choleraesuis GN=crl PE=3 SV=1 CRL_SALCH - Sigma factor-binding protein crl OS=Salmonella choleraesuis GN=crl PE=3 SV=1	260.0	[0..1]	[133..1]
CRL_ECODH - Sigma factor-binding protein Crl OS=Escherichia coli (strain K12 / DH10B) GN=crl PE=3 SV=1 CRL_ECOBW - Sigma factor-binding protein Crl OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=crl PE=3 SV=1 gi\|1786435, gi\|1... - gi\|1786435\|gb\|AAC73344.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. ... gi\|85674393, gi\|... - gi\|89107113\|ref\|AP_000893.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 subst... CRL_ECOLI - Sigma factor-binding protein crl (Curlin genes transcriptional activatory protein) - Escherichia col... gi\|16128226\|ref\|... - DNA-binding transcriptional regulator [Escherichia coli K12], DNA-binding transcriptional regulator ...	256.0	[0..1]	[133..1]
gi\|192931073, gi... - gi\|75258757\|ref\|ZP_00730147.1\| hypothetical protein EcolE2_01001377 [Escherichia coli E22], gi\|19306... gi\|1706131, gi\|4... - dbj\|BAA77909.1\| Crl protein [Escherichia coli], gi\|41154\|emb\|CAA47646.1\| crl [Escherichia coli], gi\|... gi\|188488702, gi... - gi\|75513574\|ref\|ZP_00735965.1\| hypothetical protein Ecol5_01002307 [Escherichia coli 53638], gi\|1884... gi\|190904211, gi... - gi\|75231160\|ref\|ZP_00717582.1\| hypothetical protein EcolB7_01000743 [Escherichia coli B7A], gi\|19116... gi\|193068606, gi... - gi\|75237302\|ref\|ZP_00721349.1\| hypothetical protein EcolE1_01001761 [Escherichia coli E110019], gi\|1... CRL_ECOLC - Sigma factor-binding protein Crl OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=crl P... CRL_SHIF8 - Sigma factor-binding protein Crl OS=Shigella flexneri serotype 5b (strain 8401) GN=crl PE=3 SV=1 CRL_SHISS - Sigma factor-binding protein Crl OS=Shigella sonnei (strain Ss046) GN=crl PE=3 SV=3 CRL_SHIBS - Sigma factor-binding protein Crl OS=Shigella boydii serotype 4 (strain Sb227) GN=crl PE=3 SV=3 gi\|194419192, gi... - gi\|83570392\|ref\|ZP_00921837.1\| hypothetical protein Sdys1_01001358 [Shigella dysenteriae 1012], gi\|1... gi\|124526650, gi... - gi\|124526650\|ref\|ZP_01698559.1\| transcriptional regulator Crl [Escherichia coli B], gi\|124501706\|gb\|... gi\|194438149, gi... - gi\|83586316\|ref\|ZP_00924951.1\| hypothetical protein Ecol1_01002443 [Escherichia coli 101-1], gi\|1944... gi\|254287157, gi... - gi\|254287157\|ref\|YP_003052905.1\| DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)],... gi\|253972255, gi... - gi\|254160354\|ref\|YP_003043462.1\| DNA-binding transcriptional regulator [Escherichia coli B str. REL6... CRL_ECOHS - Sigma factor-binding protein Crl OS=Escherichia coli O9:H4 (strain HS) GN=crl PE=3 SV=1 CRL_ECOSE - Sigma factor-binding protein Crl OS=Escherichia coli (strain SE11) GN=crl PE=3 SV=1 gi\|194427562, gi... - gi\|75211192\|ref\|ZP_00711299.1\| hypothetical protein EcolB_01001745 [Escherichia coli B171], gi\|19442... CRL_SHIB3 - Sigma factor-binding protein Crl OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=crl ... CRL_ECO55 - Sigma factor-binding protein Crl OS=Escherichia coli (strain 55989 / EAEC) GN=crl PE=3 SV=1 CRL_ECO24 - Sigma factor-binding protein Crl OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=crl PE=3 SV... CRL_ECO8A - Sigma factor-binding protein Crl OS=Escherichia coli O8 (strain IAI1) GN=crl PE=3 SV=1	255.0	[0..1]	[133..1]
gi\|30040101, gi\|... - gi\|30061857\|ref\|NP_836028.1\| DNA-binding transcriptional regulator Crl [Shigella flexneri 2a str. 24... CRL_SHIFL - Sigma factor-binding protein Crl OS=Shigella flexneri GN=crl PE=3 SV=3 gi\|24111730, gi\|... - gi\|24111730\|ref\|NP_706240.1\| DNA-binding transcriptional regulator Crl [Shigella flexneri 2a str. 30...	254.0	[0..1]	[133..1]
gi\|189361042, gi... - gi\|189361042\|gb\|EDU79461.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4486],... gi\|187768392, gi... - gi\|187768392\|gb\|EDU32236.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4196],... gi\|188999635, gi... - gi\|188999635\|gb\|EDU68621.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4076],... gi\|168789713, gi... - gi\|189370758\|gb\|EDU89174.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC869], ... gi\|168750224, gi... - gi\|188015599\|gb\|EDU53721.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4113],... gi\|189355749, gi... - gi\|189355749\|gb\|EDU74168.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4401],... CRL_ECO57 - Sigma factor-binding protein Crl OS=Escherichia coli O157:H7 GN=crl PE=3 SV=3 gi\|209745280, gi... - pir\|\|A85513 hypothetical protein crl [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|254791400, gi... - gi\|254791400\|ref\|YP_003076237.1\| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str... gi\|12513014, gi\|... - gi\|15799945\|ref\|NP_285957.1\| DNA-binding transcriptional regulator Crl [Escherichia coli O157:H7 EDL... gi\|13359724, gi\|... - gi\|15829521\|ref\|NP_308294.1\| DNA-binding transcriptional regulator Crl [Escherichia coli O157:H7 str... CRL_ECO5E - Sigma factor-binding protein Crl OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=crl PE=3 SV=1 gi\|217321842, gi... - gi\|217325621\|ref\|ZP_03441705.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. TW14... gi\|195938643 - gi\|195938643\|ref\|ZP_03084025.1\| DNA-binding transcriptional regulator Crl [Escherichia coli O157:H7 ... gi\|208727815, gi... - gi\|208808014\|ref\|ZP_03250351.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC42... gi\|208734368, gi... - gi\|208813091\|ref\|ZP_03254420.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC40... gi\|208819207, gi... - gi\|208819207\|ref\|ZP_03259527.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC40...	253.0	[0..1]	[133..1]
CRL_SHIDS - Sigma factor-binding protein Crl OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=crl PE=3 SV=3	252.0	[0..1]	[133..1]
CRL_ECOL6 - Sigma factor-binding protein crl OS=Escherichia coli O6 GN=crl PE=3 SV=3 CRL_ECOL6 - Sigma factor-binding protein Crl OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=c... gi\|227884744, gi... - gi\|227884744\|ref\|ZP_04002549.1\| DNA-binding transcriptional regulator Crl [Escherichia coli 83972], ...	252.0	[0..1]	[133..1]
CRL_ECOL5 - Sigma factor-binding protein Crl OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=crl PE=3 SV=3 CRL_ECOUT - Sigma factor-binding protein Crl OS=Escherichia coli (strain UTI89 / UPEC) GN=crl PE=3 SV=3 CRL_ECO45 - Sigma factor-binding protein Crl OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=crl PE=3 SV=1 gi\|237707741, gi... - gi\|237707741\|ref\|ZP_04538222.1\| sigma factor-binding protein crl [Escherichia sp. 3_2_53FAA], gi\|226... gi\|191171370, gi... - gi\|75241688\|ref\|ZP_00725525.1\| hypothetical protein EcolF_01001396 [Escherichia coli F11], gi\|191171... CRL_ECO81 - Sigma factor-binding protein Crl OS=Escherichia coli O81 (strain ED1a) GN=crl PE=3 SV=1 CRL_ECOK1 - Sigma factor-binding protein Crl OS=Escherichia coli O1:K1 / APEC GN=crl PE=3 SV=1	251.0	[0..1]	[133..1]
gi\|42392 - gi\|42392\|emb\|CAA23606.1\| unnamed protein product [Escherichia coli]	249.0	[0..1]	[133..1]
CRL_YERPS - Sigma factor-binding protein crl OS=Yersinia pseudotuberculosis GN=crl PE=3 SV=1 gi\|165936077, gi... - gi\|89105981\|ref\|ZP_01178492.1\| hypothetical protein Ypesb_01000050 [Yersinia pestis biovar Orientali... CRL_YERPA - Sigma factor-binding protein Crl OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=crl PE=3 SV=1 CRL_YERPN - Sigma factor-binding protein Crl OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=crl PE=3 SV=1 gi\|166011076, gi... - gi\|166011076\|ref\|ZP_02231974.1\| transcriptional activator Crl [Yersinia pestis biovar Antiqua str. E... gi\|166205840, gi... - gi\|166213053\|ref\|ZP_02239088.1\| transcriptional activator Crl [Yersinia pestis biovar Antiqua str. B... gi\|167399104, gi... - gi\|167399104\|ref\|ZP_02304628.1\| transcriptional activator Crl [Yersinia pestis biovar Antiqua str. U... gi\|167421669, gi... - gi\|167421669\|ref\|ZP_02313422.1\| transcriptional activator Crl [Yersinia pestis biovar Orientalis str... gi\|167423371, gi... - gi\|167423371\|ref\|ZP_02315124.1\| transcriptional activator Crl [Yersinia pestis biovar Mediaevalis st... gi\|167469073 - gi\|167469073\|ref\|ZP_02333777.1\| transcriptional activator Crl [Yersinia pestis FV-1] gi\|229838829, gi... - gi\|229838829\|ref\|ZP_04458988.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... CRL_YERPY - Sigma factor-binding protein Crl OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=crl P... gi\|229896019, gi... - gi\|229896019\|ref\|ZP_04511189.1\| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A],... CRL_YERPB - Sigma factor-binding protein Crl OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=crl PE... gi\|229899398, gi... - gi\|229899398\|ref\|ZP_04514541.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... CRL_YERPE - Sigma factor-binding protein Crl OS=Yersinia pestis GN=crl PE=3 SV=1 gi\|149291347, gi... - gi\|149364934\|ref\|ZP_01886969.1\| curlin genes regulatory protein [Yersinia pestis CA88-4125], gi\|1492... CRL_YERPG - Sigma factor-binding protein Crl OS=Yersinia pestis bv. Antiqua (strain Angola) GN=crl PE=3 SV=1 gi\|45440560, gi\|... - gi\|45440560\|ref\|NP_992099.1\| DNA-binding transcriptional regulator Crl [Yersinia pestis biovar Micro... gi\|21957705, gi\|... - gi\|22124872\|ref\|NP_668295.1\| DNA-binding transcriptional regulator Crl [Yersinia pestis KIM], gi\|219... gi\|218930250, gi... - gi\|218930250\|ref\|YP_002348125.1\| DNA-binding transcriptional regulator Crl [Yersinia pestis CO92], g... CRL_YERPS - Sigma factor-binding protein Crl OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=crl P... gi\|165926647, gi... - gi\|165926647\|ref\|ZP_02222479.1\| transcriptional activator Crl [Yersinia pestis biovar Orientalis str...	247.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPSGHPKS RLIKKFTALG PYIREGQCED NRFFFDCLAV CVNVKPAPEK REFWGWWMEL  60
   61 EAQEKRFTYR YQFGLFDKEG NWTVVPINET EVVERLEYTL REFHEKLRDL LISMELALEP 120
  121 SDDFNDEPVK LSA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.657577
Match:	PF07417.3
Description:	No description for PF07417.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits