YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29140745, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29140745, gi|....

Description	E-value	Query Range	Subject Range
gi\|91209227, gi\|... - gi\|91209227\|ref\|YP_539213.1\| iron-sulfur cluster insertion protein ErpA [Escherichia coli UTI89], gi... gi\|26246102, gi\|... - gi\|26246102\|ref\|NP_752141.1\| iron-sulfur cluster insertion protein ErpA [Escherichia coli CFT073], g...	4.0E-43	[5..129]	[1..125]
gi\|111611416, gi... - gi\|111611416\|ref\|ZP_01398505.1\| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2], ...	5.0E-41	[14..128]	[82..196]
gi\|108766804, gi... - gi\|68560649\|ref\|ZP_00599960.1\| HesB/YadR/YfhF [Rubrobacter xylanophilus DSM 9941], gi\|68513180\|gb\|EA...	3.0E-40	[11..128]	[23..140]
ERPA_BORA1 - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella avium (strain 197N) GN=erpA PE=3 S...	4.0E-40	[9..129]	[2..123]
ERPA_BORPA - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella parapertussis GN=erpA PE=3 SV=1 ERPA_BORPA - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella parapertussis (strain 12822 / ATCC... ERPA_BORPE - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella pertussis GN=erpA PE=3 SV=1 ERPA_BORBR - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella bronchiseptica (strain ATCC BAA-58... ERPA_BORBR - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella bronchiseptica GN=erpA PE=3 SV=1 ERPA_BORPE - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella pertussis (strain Tohama I / ATCC ...	1.0E-39	[9..129]	[2..123]
gi\|217420420, gi... - gi\|217420420\|ref\|ZP_03451925.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|194569533, gi... - gi\|254299238\|ref\|ZP_04966688.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|226198375, gi... - gi\|226198375\|ref\|ZP_03793944.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|237504262, gi... - gi\|237813776\|ref\|YP_002898227.1\| putative conserved hypothetical protein [Burkholderia pseudomallei ... gi\|238561984, gi... - gi\|238561984\|ref\|ZP_00441063.2\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... ERPA_BURM9 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain NCTC 10229) GN=er... ERPA_BURMS - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain SAVP1) GN=erpA PE... ERPA_BURM7 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain NCTC 10247) GN=er... ERPA_BURP6 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 668) GN=erp... ERPA_BURP1 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 1710b) GN=e... ERPA_BURP0 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 1106a) GN=e... ERPA_BURTA - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia thailandensis (strain E264 / ATC... gi\|254261342, gi... - gi\|254261342\|ref\|ZP_04952396.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|242138463, gi... - gi\|242315224\|ref\|ZP_04814240.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURPS - Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei GN=erpA PE=3 SV=1 ERPA_BURMA - Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei GN=erpA PE=3 SV=1 gi\|194505330, gi... - gi\|254180678\|ref\|ZP_04887276.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|160694807, gi... - gi\|254178893\|ref\|ZP_04885547.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|254194830, gi... - gi\|254194830\|ref\|ZP_04901260.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|194507224, gi... - gi\|254191505\|ref\|ZP_04898008.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|254355909, gi... - gi\|254355909\|ref\|ZP_04972187.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|167904243 - gi\|167904243\|ref\|ZP_02491448.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURPS - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain K96243) GN=... gi\|194522849, gi... - gi\|254202612\|ref\|ZP_04908975.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|167895853 - gi\|167895853\|ref\|ZP_02483255.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURMA - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain ATCC 23344) GN=er... gi\|134280487, gi... - gi\|134280487\|ref\|ZP_01767198.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167920455 - gi\|167920455\|ref\|ZP_02507546.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167912504 - gi\|167912504\|ref\|ZP_02499595.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167817376 - gi\|167817376\|ref\|ZP_02449056.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167740162 - gi\|167740162\|ref\|ZP_02412936.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167847266 - gi\|167847266\|ref\|ZP_02472774.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167825783 - gi\|167825783\|ref\|ZP_02457254.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167580601 - gi\|167580601\|ref\|ZP_02373475.1\| iron-sulfur cluster assembly accessory protein [Burkholderia thailan... gi\|243063547, gi... - gi\|243063547\|gb\|EES45733.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei PRL-... gi\|167721188 - gi\|167721188\|ref\|ZP_02404424.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167618709 - gi\|167618709\|ref\|ZP_02387340.1\| iron-sulfur cluster assembly accessory protein [Burkholderia thailan...	1.0E-39	[9..129]	[2..122]
ERPA2_METCA - Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1 ERPA2_METCA - Iron-sulfur cluster insertion protein ErpA 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB ...	3.0E-39	[23..129]	[24..130]
ERPA_POLSQ - Putative iron-sulfur cluster insertion protein ErpA OS=Polynucleobacter necessarius subsp. asymbioti...	3.0E-39	[11..128]	[4..123]
gi\|126208405, gi... - gi\|126208405\|ref\|YP_001053630.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae L20], gi... gi\|190150256, gi... - gi\|190150256\|ref\|YP_001968781.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae serovar ... gi\|165976348, gi... - gi\|165976348\|ref\|YP_001651941.1\| iron-binding protein [Actinobacillus pleuropneumoniae serovar 3 str... gi\|32034039 - gi\|32034039\|ref\|ZP_00134283.1\| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu...	4.0E-39	[22..129]	[1..107]
gi\|37680911, gi\|... - gi\|37680911\|ref\|NP_935520.1\| iron-sulfur cluster insertion protein ErpA [Vibrio vulnificus YJ016], g...	4.0E-39	[5..129]	[1..125]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGENLSNYRC RLEQNMSDDV ALPLQFTDAA ANKVKSLIAD EDNPNLKLRV YITGGGCSGF  60
   61 QYGFTFDDQV NEGDMTIEKQ GVGLVVDPMS LQYLVGGSVD YTEGLEGSRF IVTNPNAKST 120
  121 CGCGSSFSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2apnA
Description:	No description for 2apnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits