YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2822350, gi\|1...
Organism:	Halobacterium sp. NRC-1
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2822350, gi|1....

Description	E-value	Query Range	Subject Range
gi\|17230686, gi\|... - gi\|17230686\|ref\|NP_487234.1\| hypothetical protein all3194 [Nostoc sp. PCC 7120], gi\|17132289\|dbj\|BAB... gi\|25347072 - pir\|\|AC2205 hypothetical protein all3194 [imported] - Nostoc sp. (strain PCC 7120)	273.0	[0..10]	[236..1]
gi\|186683677, gi... - gi\|53686882\|ref\|ZP_00106310.2\| COG2135: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	273.0	[0..10]	[236..1]
gi\|45508692, gi\|... - gi\|75910096\|ref\|YP_324392.1\| hypothetical protein Ava_3892 [Anabaena variabilis ATCC 29413], gi\|7570...	270.0	[0..10]	[236..1]
gi\|55376572, gi\|... - gi\|55376572\|ref\|YP_134424.1\| hypothetical protein pNG6183 [Haloarcula marismortui ATCC 43049], gi\|55...	270.0	[0..10]	[237..1]
gi\|71741915, gi\|... - gi\|71837633\|ref\|ZP_00677397.1\| Protein of unknown function DUF159 [Pelobacter propionicus DSM 2379],...	264.0	[0..10]	[225..1]
gi\|221314277 - gi\|221314277\|ref\|ZP_03596082.1\| hypothetical protein BsubsN3_11232 [Bacillus subtilis subsp. subtili... gi\|221319199 - gi\|221319199\|ref\|ZP_03600493.1\| hypothetical protein BsubsJ_11158 [Bacillus subtilis subsp. subtilis... YOQW_BACSU - UPF0361 protein yoqW OS=Bacillus subtilis GN=yoqW PE=3 SV=1 YOQW_BPSPB - Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 YOQW_BACSU - Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 gi\|221323475 - gi\|221323475\|ref\|ZP_03604769.1\| hypothetical protein BsubsS_11287 [Bacillus subtilis subsp. subtilis...	261.0	[0..10]	[223..1]
gi\|89097945, gi\|... - gi\|89097945\|ref\|ZP_01170832.1\| hypothetical protein B14911_23437 [Bacillus sp. NRRL B-14911], gi\|890...	261.0	[0..11]	[228..23]
gi\|56379871, gi\|... - gi\|56420029\|ref\|YP_147347.1\| hypothetical protein GK1494 [Geobacillus kaustophilus HTA426], gi\|56379...	260.0	[0..10]	[229..1]
gi\|56475513, gi\|... - gi\|56475513\|ref\|YP_157102.1\| hypothetical protein ebA145 [Aromatoleum aromaticum EbN1], gi\|56311556\|...	259.0	[0..10]	[231..1]
gi\|94970917, gi\|... - gi\|94970917\|ref\|YP_592965.1\| hypothetical protein Acid345_3891 [Candidatus Koribacter versatilis Ell...	259.0	[0..10]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTLLEKRDM CGRNALFVTQ EDLEKHFGAE VVTDGGYAPR YNIAPGEQLD VITNRAAAEI  60
   61 DQYHWGLLPS WADDPGEGII NARSETAAEK RSFRDAWDSR PCLVLSSGFY EWQKRDSGPK 120
  121 QPYRIYREDA PAFAMAGLWE VWEGEESAIP CVTILTTEPN DLMQPIHDRM PVVLPDGDEE 180
  181 TWLTASPDER EELCQPYPEE DLTAYEVSTR VNNSGNDDAT VIEPLDHEQS GLDEFSSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	2icuA
Description:	No description for 2icuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits