YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54643807, gi\|...
Organism:	Drosophila pseudoobscura
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54643807, gi|....

Description	E-value	Query Range	Subject Range
gi\|194134659, gi... - gi\|195345753\|ref\|XP_002039433.1\| GM22970 [Drosophila sechellia], gi\|194134659\|gb\|EDW56175.1\| GM22970... gi\|194188533, gi... - gi\|195479739\|ref\|XP_002101009.1\| GE15853 [Drosophila yakuba], gi\|194188533\|gb\|EDX02117.1\| GE15853 [D... gi\|190649439, gi... - gi\|194893013\|ref\|XP_001977790.1\| GG19234 [Drosophila erecta], gi\|190649439\|gb\|EDV46717.1\| GG19234 [D... CG14207-PB - This gene is referred to in FlyBase by the symbol Dmel\CG14207 (CG14207, FBgn0031037). It is a prote...	136.0	[0..1]	[183..1]
HSPB1_MOUSE - Heat shock protein beta-1 OS=Mus musculus GN=Hspb1 PE=1 SV=3	130.0	[0..4]	[183..1]
HSPB1_BOVIN - Heat shock protein beta-1 OS=Bos taurus GN=HSPB1 PE=2 SV=1	130.0	[0..4]	[183..1]
HSPB1_RAT - Heat shock protein beta-1 OS=Rattus norvegicus GN=Hspb1 PE=1 SV=1	128.0	[0..4]	[183..1]
HSPB1_PIG - Heat shock protein beta-1 OS=Sus scrofa GN=HSPB1 PE=2 SV=1 gi\|55668280 - gb\|AAV54182.1\| Hsp27 [Sus scrofa]	127.0	[0..4]	[183..1]
HSPB1_CRILO - Heat shock protein beta-1 OS=Cricetulus longicaudatus GN=HSPB1 PE=1 SV=1	126.0	[0..4]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEANKRNIP IKLGDFSVID TEFSNIRERF DSEMRKMEEE MAKFRHELMN REANFFESTS  60
   61 STTNSALPSR IPKQQNYVSD ISSPLIQDEG DNKVLKLRFD VSQYAPEEIV VKTVDQKLLV 120
  121 HAKHEEKSDT KSVYREYNRE FLLPKGVNPE SIRSSLSKDG VLTVDAPLPA LTAGETLIPI 180
  181 AHK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	2bolA
Description:	CRYSTAL STRUCTURE AND ASSEMBLY OF TSP36, A METAZOAN SMALL HEAT SHOCK PROTEIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits