YRC Public Data Repository - Protein Structure Prediction

Protein:	tr\|M3X0Z8\|M3X0Z8...
Organism:	Felis catus
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|M3X0Z8|M3X0Z8....

Description	E-value	Query Range	Subject Range
snr-4 - small nuclear ribonucleoprotein D2 like status:Confirmed UniProt:Q18786 protein_id:CAB01413.1	4.0E-32	[1..118]	[1..118]
gi\|66500455 - gi\|66500455\|ref\|XP_397475.2\| PREDICTED: similar to CG1249-PA isoform 1 [Apis mellifera]	3.0E-31	[1..117]	[1..117]
gi\|115928632, gi... - gi\|115928632\|ref\|XP_001177104.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	5.0E-31	[1..118]	[1..118]
gi\|82889713 - gi\|82889713\|ref\|XP_910243.1\| PREDICTED: similar to Sm D2 [Mus musculus]	2.0E-29	[1..118]	[1..118]
gi\|60834798 - gi\|60834798\|gb\|AAX37111.1\| small nuclear ribonucleoprotein D2 polypeptide [synthetic construct]	3.0E-29	[1..118]	[1..118]
gi\|94733476, gi\|... - gi\|94733476\|emb\|CAK04394.1\| novel protein [Danio rerio], gi\|68439655\|ref\|XP_699983.1\| PREDICTED: sim... gi\|225706716 - gi\|225706716\|gb\|ACO09204.1\| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]	6.0E-29	[1..118]	[1..118]
gi\|89272067, gi\|... - gi\|89272067\|emb\|CAJ81304.1\| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus tropical...	7.0E-29	[1..118]	[1..118]
gi\|62717927, gi\|... - gi\|62717927\|ref\|XP_576676.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide D2 [R...	1.0E-28	[1..118]	[1..118]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLNKPKSE MTPEELQKRE EEEFNTGPLS VLTQSVKNNT QVLINCRNNK KLLGRVKAFD  60
   61 RHCNMVLENV KEMWTEVPKS GKGKKKSKPV NKDRYISKMF LRGDSVIVVL RNPLIAGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1b34B
Description:	D2 core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: