YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38233523
Organism:	Corynebacterium diphtheriae NCTC 13129
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38233523.

Description	E-value	Query Range	Subject Range
gi\|23492890, gi\|... - gi\|25027608\|ref\|NP_737662.1\| hypothetical protein CE1052 [Corynebacterium efficiens YS-314], gi\|2349...	308.0	[0..6]	[295..2]
gi\|62389878, gi\|... - gi\|62389878\|ref\|YP_225280.1\| hypothetical protein cg1127 [Corynebacterium glutamicum ATCC 13032], gi...	307.0	[0..6]	[295..5]
gi\|29606950, gi\|... - gi\|29829841\|ref\|NP_824475.1\| hypothetical protein SAV_3299 [Streptomyces avermitilis MA-4680], gi\|29...	299.0	[0..4]	[291..1]
MCA_STRCO - Mycothiol S-conjugate amidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=mca...	298.0	[0..4]	[294..1]
gi\|111022815, gi... - gi\|111022815\|ref\|YP_705787.1\| N-acetylglucosaminylphosphatidylinositol deacetylase [Rhodococcus jost...	294.0	[0..6]	[291..2]
gi\|71914585, gi\|... - gi\|72160853\|ref\|YP_288510.1\| hypothetical protein Tfu_0449 [Thermobifida fusca YX], gi\|71914585\|gb\|A...	293.0	[0..4]	[292..1]
gi\|108771525, gi... - gi\|108801106\|ref\|YP_641303.1\| LmbE-like protein [Mycobacterium sp. MCS], gi\|108771525\|gb\|ABG10247.1\|... gi\|92438088, gi\|... - gi\|92917690\|ref\|ZP_01286300.1\| LmbE-like protein [Mycobacterium sp. KMS], gi\|92438088\|gb\|EAS95945.1\|... gi\|92430790, gi\|... - gi\|92911786\|ref\|ZP_01280424.1\| LmbE-like protein [Mycobacterium sp. JLS], gi\|92430790\|gb\|EAS90130.1\|...	292.0	[0..6]	[293..2]
gi\|255095852 - gi\|255095852\|ref\|ZP_05325330.1\| mycothiol conjugate amidase [Mycobacterium tuberculosis KZN 605] gi\|254814875 - gi\|254814875\|ref\|ZP_05219876.1\| mycothiol conjugate amidase [Mycobacterium tuberculosis KZN 4207] gi\|254550074 - gi\|254550074\|ref\|ZP_05140521.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis '98-R604... gi\|253321385, gi... - gi\|253799882\|ref\|YP_003032883.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis KZN 143... gi\|134149507, gi... - gi\|254363993\|ref\|ZP_04980039.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis str. Haa... gi\|148505019, gi... - gi\|167967357\|ref\|ZP_02549634.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis H37Ra], ... gi\|31617861, gi\|... - gi\|31792273\|ref\|NP_854766.1\| Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase) [Mycoba... MCA_MYCTU - Mycothiol S-conjugate amidase OS=Mycobacterium tuberculosis GN=mca PE=1 SV=1 gi\|123214634, gi... - gi\|76785142\|ref\|ZP_00772315.1\| COG2120: Uncharacterized proteins, LmbE homologs [Mycobacterium tuber... gi\|81254994, gi\|... - gi\|81254994\|ref\|ZP_00879488.1\| COG2120: Uncharacterized proteins, LmbE homologs [Mycobacterium tuber... gi\|215402905 - gi\|215402905\|ref\|ZP_03415086.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis 02_1987] gi\|215410695 - gi\|215410695\|ref\|ZP_03419503.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis 94_M4241... gi\|215426371 - gi\|215426371\|ref\|ZP_03424290.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis T92] gi\|215429948 - gi\|215429948\|ref\|ZP_03427867.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis EAS054] MCA_MYCTO - Mycothiol S-conjugate amidase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=mca PE=3 ... gi\|121637011, gi... - gi\|121637011\|ref\|YP_977234.1\| Mycothiol conjugate amidase Mca [Mycobacterium bovis BCG str. Pasteur ... gi\|215445237 - gi\|215445237\|ref\|ZP_03431989.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis T85] MCA_MYCTU - Mycothiol S-conjugate amidase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mca PE=1 ... gi\|218752762 - gi\|218752762\|ref\|ZP_03531558.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis GM 1503] gi\|219556959 - gi\|219556959\|ref\|ZP_03536035.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis T17] gi\|224772597, gi... - gi\|224989484\|ref\|YP_002644171.1\| mycothiol conjugate amidase [Mycobacterium bovis BCG str. Tokyo 172...	290.0	[0..6]	[292..2]
gi\|145215124, gi... - gi\|89341321\|ref\|ZP_01193565.1\| LmbE-like protein [Mycobacterium flavescens PYR-GCK], gi\|89318481\|gb\|...	286.0	[0..6]	[295..2]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSSPARL LAIHAHPDDE SSKGAATMAK YVAEGHEVMV VTCTGGELGD VLNPSLDKTA  60
   61 VEGRIAEVRR EEMAQAVKEL GVQHRWLGYH DSGFPEGEPH PPVPPGSFAL EDSDEVAAKI 120
  121 VEIIREFRPH VIVTYDENGG YPHPDHLKVH EVSMLAWDLA GDPDYRLDLG QPWAPLKLYY 180
  181 THGFIRQRME MFHNLLVEQG KPSPYEGILD RWLEHRADIM ARVTTQVYAA DYFDRRDAAL 240
  241 KAHATQIDPA GTFFATPIET QQQLWPTEEF ELARTRVSTS LPEDDLFEGI DISAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	1q7tA
Description:	Rv1170 (MshB) from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits