YRC Public Data Repository - Protein Structure Prediction

Protein:	tr\|M3W8E3\|M3W8E3...
Organism:	Felis catus
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|M3W8E3|M3W8E3....

Description	E-value	Query Range	Subject Range
gi\|62204372, gi\|... - gi\|62955177\|ref\|NP_001017600.1\| hypothetical protein LOC550263 [Danio rerio], gi\|62204372\|gb\|AAH9285...	3.0E-63	[1..150]	[1..150]
gi\|47220948 - gi\|47220948\|emb\|CAG03481.1\| unnamed protein product [Tetraodon nigroviridis]	4.0E-63	[1..150]	[1..150]
gi\|1017823 - gi\|1017823\|gb\|AAA91458.1\| RNA polymerase II subunit	2.0E-62	[1..150]	[1..150]
gi\|62859379 - gi\|62859379\|ref\|NP_001016113.1\| polymerase (RNA) II (DNA directed) polypeptide H [Xenopus (Silurana)...	5.0E-62	[1..150]	[1..150]
gi\|195495435, gi... - gi\|195495435\|ref\|XP_002095266.1\| GE19787 [Drosophila yakuba], gi\|195476786\|ref\|XP_002086242.1\| GE230... gi\|194122367, gi... - gi\|195348643\|ref\|XP_002040857.1\| GM22401 [Drosophila sechellia], gi\|194122367\|gb\|EDW44410.1\| GM22401... gi\|220952982, gi... - gi\|220952982\|gb\|ACL89034.1\| Rpb8-PA [synthetic construct], gi\|220942882\|gb\|ACL83984.1\| Rpb8-PA [synt... gi\|195592244, gi... - gi\|195592244\|ref\|XP_002085845.1\| GD14989 [Drosophila simulans], gi\|194197854\|gb\|EDX11430.1\| GD14989 ... gi\|54642281, gi\|... - gi\|54642281\|gb\|EAL31030.1\| GA10862 [Drosophila pseudoobscura pseudoobscura], gi\|125978971\|ref\|XP_001... gi\|125978971\|ref... - GA10862-PA [Drosophila pseudoobscura], GA10862 [Drosophila pseudoobscura pseudoobscura] Rpb8-PA - The gene Rpb8 is referred to in FlyBase by the symbol Dmel\Rpb8 (CG11246, FBgn0037121). It is a prot... gi\|194118457, gi... - gi\|195160970\|ref\|XP_002021344.1\| GL24857 [Drosophila persimilis], gi\|194118457\|gb\|EDW40500.1\| GL2485... gi\|190655459, gi... - gi\|194875877\|ref\|XP_001973676.1\| GG16218 [Drosophila erecta], gi\|190655459\|gb\|EDV52702.1\| GG16218 [D...	9.0E-62	[1..150]	[1..149]
gi\|148232948, gi... - gi\|49117881\|gb\|AAH72811.1\| MGC80152 protein [Xenopus laevis], gi\|148232948\|ref\|NP_001085470.1\| MGC80...	1.0E-61	[1..150]	[1..150]
gi\|82942471, gi\|... - gi\|94393926\|ref\|XP_986091.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide H ...	9.0E-61	[1..150]	[1..150]
AGAP012397-PA - DNA-directed RNA polymerases I, II, and III subunit RPABC3\|protein_coding\|3L:41720478:41721034:-1\|ge... gi\|58393552, gi\|... - gi\|58393552\|ref\|XP_320161.2\| AGAP012397-PA [Anopheles gambiae str. PEST], gi\|55234259\|gb\|EAA00358.2\|...	2.0E-60	[1..150]	[1..150]
gi\|157107468, gi... - gi\|157107468\|ref\|XP_001649793.1\| DNA-directed RNA polymerase subunit rpb8 [Aedes aegypti], gi\|108884...	3.0E-60	[1..150]	[1..150]
gi\|66508630 - gi\|66508630\|ref\|XP_394557.2\| PREDICTED: similar to Rpb8 CG11246-PA isoform 1 [Apis mellifera]	1.0E-59	[1..150]	[1..151]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGILFEDIF DVKDIDPEGK KFDRVSRLHC ESESFKMDLI LDVNIQIYPV DLGDKFRLVI  60
   61 ASTLYEDGTL DDGEYNPTDD RPSRADQFEY VMYGKVYRIE GDETSTEAAT RLSAYVSYGG 120
  121 LLMRLQGDAN NLHGFEVDSR VYLLMKKLAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.221849
Match:	2f3iA
Description:	No description for 2f3iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits