YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38199368
Organism:	Corynebacterium diphtheriae
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38199368.

Description	E-value	Query Range	Subject Range
gi\|145295325, gi... - gi\|145295325\|ref\|YP_001138146.1\| hypothetical protein cgR_1265 [Corynebacterium glutamicum R], gi\|14... gi\|62390074, gi\|... - gi\|62390074\|ref\|YP_225476.1\| respiratory nitrate reductase 2 gamma chain [Corynebacterium glutamicum...	275.0	[0..1]	[259..1]
gi\|25027849, gi\|... - gi\|25027849\|ref\|NP_737903.1\| putative respiratory nitrate reductase gamma chain [Corynebacterium eff...	272.0	[0..1]	[259..1]
NARX_MYCTU - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis GN=narX PE=1 SV=2 NARX_MYCTO - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=nar... NARX_MYCTU - Nitrate reductase-like protein NarX OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=nar... gi\|148661535, gi... - gi\|167968650\|ref\|ZP_02550927.1\| nitrate reductase narX [Mycobacterium tuberculosis H37Ra], gi\|148661... gi\|215411386 - gi\|215411386\|ref\|ZP_03420194.1\| nitrate reductase narX [Mycobacterium tuberculosis 94_M4241A] gi\|253799222, gi... - gi\|253799222\|ref\|YP_003032223.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 1435], gi\|25... gi\|215403956 - gi\|215403956\|ref\|ZP_03416137.1\| nitrate reductase narX [Mycobacterium tuberculosis 02_1987] gi\|254550749 - gi\|254550749\|ref\|ZP_05141196.1\| nitrate reductase narX [Mycobacterium tuberculosis '98-R604 INH-RIF-... gi\|254815534 - gi\|254815534\|ref\|ZP_05220535.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 4207] gi\|76784529, gi\|... - gi\|76784529\|ref\|ZP_00771713.1\| COG5013: Nitrate reductase alpha subunit [Mycobacterium tuberculosis ... gi\|218753446 - gi\|218753446\|ref\|ZP_03532242.1\| nitrate reductase narX [Mycobacterium tuberculosis GM 1503] gi\|255096514 - gi\|255096514\|ref\|ZP_05325992.1\| nitrate reductase narX [Mycobacterium tuberculosis KZN 605]	248.0	[0..2]	[240..415]
gi\|121493291, gi... - gi\|121637644\|ref\|YP_977867.1\| putative nitrate reductase NarX [Mycobacterium bovis BCG str. Pasteur ... gi\|224990119, gi... - gi\|224990119\|ref\|YP_002644806.1\| putative nitrate reductase [Mycobacterium bovis BCG str. Tokyo 172]... gi\|31792924, gi\|... - gi\|31792924\|ref\|NP_855417.1\| nitrate reductase NarX [Mycobacterium bovis AF2122/97], gi\|31618515\|emb... gi\|6651231 - gi\|6651231\|gb\|AAF22229.1\|AF149772_1 fused nitrate reductase [Mycobacterium bovis BCG]	247.0	[0..2]	[240..415]
gi\|62127781, gi\|... - gi\|62180148\|ref\|YP_216565.1\| nitrate reductase 2, gamma subunit [Salmonella enterica subsp. enterica...	229.0	[0..2]	[228..232]
gi\|3560007, gi\|2... - gi\|3560007\|emb\|CAA20629.1\| putative nitrate reductase gamma chain NarI [Streptomyces coelicolor A3(2... gi\|7481080 - pir\|\|T35224 probable nitrate reductase gamma chain - Streptomyces coelicolor	226.0	[0..4]	[241..1]
gi\|145215233, gi... - gi\|89342663\|ref\|ZP_01194898.1\| Nitrate reductase, gamma subunit [Mycobacterium flavescens PYR-GCK], ...	223.0	[0..6]	[244..5]
gi\|119958313, gi... - gi\|90202369\|ref\|ZP_01205015.1\| Nitrate reductase, gamma subunit [Mycobacterium vanbaalenii PYR-1], g...	223.0	[0..6]	[244..5]
gi\|52080444, gi\|... - gi\|52785825\|ref\|YP_091654.1\| NarI [Bacillus licheniformis ATCC 14580], gi\|52348327\|gb\|AAU40961.1\| Na...	222.0	[0..3]	[230..1]
gi\|251804580, gi... - gi\|251811901\|ref\|ZP_04826374.1\| nitrate reductase [Staphylococcus epidermidis BCM-HMP0060], gi\|25180... gi\|57636109, gi\|... - gi\|57865451\|ref\|YP_189540.1\| respiratory nitrate reductase, gamma subunit [Staphylococcus epidermidi... gi\|27468890, gi\|... - gi\|27468890\|ref\|NP_765527.1\| nitrate reductase gamma chain [Staphylococcus epidermidis ATCC 12228], ...	221.0	[0..3]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSYDMFLWV AFPWLAIAAF AVGVSWRWRT DQFGWTTHSS QIYESTLLRL SSPLFHYGMM  60
   61 FVILGHVMGL AFPKSWTRAV GINDHAYHLI ATIPGTIAGI AAVIGLCGLI YRRVSNKAVL 120
  121 LSTSKSDKVM YILLALAIFS GFIATVSTQV FGGPHGYDYR ETISPWLRQL FIFNPTPELM 180
  181 LDVPWQFKVH VISGFTMLAV WPFTRLVHAF SAPVGYVNRP YVVYRSRDIT TQPSQQHVAW 240
  241 APVQHDKNQS KDEAGWTGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1q16C
Description:	Crystal structure of Nitrate Reductase A, NarGHI, from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nitrate reductase activity	8.42060418947243	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	7.2464995846242	bayes_pls_golite062009
electron carrier activity	1.14948153252384	bayes_pls_golite062009
catalytic activity	0.434711796157625	bayes_pls_golite062009
oxidoreductase activity	0.34569235854639	bayes_pls_golite062009
binding	0.181448088334902	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: