YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38233044
Organism:	Corynebacterium diphtheriae NCTC 13129
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38233044.

Description	E-value	Query Range	Subject Range
gi\|41410208, gi\|... - gi\|41410208\|ref\|NP_963044.1\| preprotein translocase subunit SecE [Mycobacterium avium subsp. paratub...	114.0	[0..10]	[119..18]
gi\|92432232, gi\|... - gi\|92910144\|ref\|ZP_01278920.1\| SecE subunit of protein translocation complex [Mycobacterium sp. JLS]...	101.0	[0..16]	[119..85]
gi\|145218180, gi... - gi\|89338460\|ref\|ZP_01191225.1\| SecE subunit of protein translocation complex [Mycobacterium flavesce...	100.0	[0..11]	[119..19]
gi\|19551717, gi\|... - gi\|62389372\|ref\|YP_224774.1\| preprotein translocase subunit SecE [Corynebacterium glutamicum ATCC 13... gi\|7108626, gi\|1... - gi\|7108626\|gb\|AAF36505.1\|AF130462_2 SecE protein [Corynebacterium glutamicum], gi\|14041186\|emb\|CAC38...	100.0	[0..16]	[121..2]
gi\|7288196 - gi\|7288196\|dbj\|BAA92857.1\| secE [Corynebacterium glutamicum] gi\|145294626, gi... - gi\|145294626\|ref\|YP_001137447.1\| preprotein translocase subunit SecE [Corynebacterium glutamicum R],...	100.0	[0..16]	[121..2]
gi\|108797895, gi... - gi\|108797895\|ref\|YP_638092.1\| preprotein translocase subunit SecE [Mycobacterium sp. MCS], gi\|108768... gi\|119693079, gi... - gi\|92913608\|ref\|ZP_01282236.1\| SecE subunit of protein translocation complex [Mycobacterium sp. KMS]...	100.0	[0..16]	[119..25]
gi\|121492206, gi... - gi\|121636559\|ref\|YP_976782.1\| preprotein translocase subunit SecE [Mycobacterium bovis BCG str. Past... gi\|254363592, gi... - gi\|254363592\|ref\|ZP_04979638.1\| preprotein translocase secE1 [Mycobacterium tuberculosis str. Haarle... gi\|194543021, gi... - gi\|81255498\|ref\|ZP_00879974.1\| COG0690: Preprotein translocase subunit SecE [Mycobacterium tuberculo... gi\|148720369, gi... - gi\|76785662\|ref\|ZP_00772827.1\| COG0690: Preprotein translocase subunit SecE [Mycobacterium tuberculo... gi\|148660412, gi... - gi\|167969068\|ref\|ZP_02551345.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis H37R... gi\|255098157 - gi\|255098157\|ref\|ZP_05327635.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis KZN ... gi\|254817183 - gi\|254817183\|ref\|ZP_05222184.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis KZN ... gi\|253319081, gi... - gi\|253797578\|ref\|YP_003030579.1\| preprotein translocase subunit secE1 [Mycobacterium tuberculosis KZ... SECE_MYCTO - Protein translocase subunit SecE OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=secE P... gi\|215402413 - gi\|215402413\|ref\|ZP_03414594.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis 02_1... gi\|215410185 - gi\|215410185\|ref\|ZP_03418993.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis 94_M... gi\|215444757 - gi\|215444757\|ref\|ZP_03431509.1\| preprotein translocase subunit SecE [Mycobacterium tuberculosis T85] gi\|224989031, gi... - gi\|224989031\|ref\|YP_002643718.1\| preprotein translocase subunit SecE [Mycobacterium bovis BCG str. T... SECE_MYCBO - Probable preprotein translocase subunit secE OS=Mycobacterium bovis GN=secE PE=3 SV=1 SECE_MYCBO - Protein translocase subunit SecE OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=secE PE... SECE_MYCTU - Protein translocase subunit SecE OS=Mycobacterium tuberculosis GN=secE PE=3 SV=1 SECE_MYCTU - Protein translocase subunit SecE OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=secE P...	97.0	[0..12]	[119..20]
gi\|120402245, gi... - gi\|90202746\|ref\|ZP_01205392.1\| SecE subunit of protein translocation complex [Mycobacterium vanbaale...	94.0	[0..13]	[119..20]
SECE_MYCLE - Probable preprotein translocase subunit secE OS=Mycobacterium leprae GN=secE PE=3 SV=1 SECE_MYCLE - Protein translocase subunit SecE OS=Mycobacterium leprae (strain TN) GN=secE PE=3 SV=1 gi\|221230498, gi... - gi\|221230498\|ref\|YP_002503914.1\| SecE preprotein translocase [Mycobacterium leprae Br4923], gi\|21993...	93.0	[0..15]	[119..19]
gi\|25027041, gi\|... - gi\|25027041\|ref\|NP_737095.1\| preprotein translocase subunit SecE [Corynebacterium efficiens YS-314],...	91.0	[0..16]	[121..2]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNRYSDIVS TSYQFSTSRR AVSDQQPRPT GKRQLAGVST TSTASYEAKK VAPTGGDDER  60
   61 NGNKVVSFVP EVASEMKKVI WPTAQQMMSY TLIVFAFLIL VTALVAGVDF LAGLGVEKVL 120
  121 TK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2akhZ
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits