YRC Public Data Repository - Protein Structure Prediction

Protein:	tr\|M3WD53\|M3WD53...
Organism:	Felis catus
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|M3WD53|M3WD53....

Description	E-value	Query Range	Subject Range
gi\|50749324 - gi\|50749324\|ref\|XP_421587.1\| PREDICTED: similar to hypothetical protein D10Ertd641e [Gallus gallus]	200.0	[0..19]	[110..43]
APC16_BOVIN - Anaphase-promoting complex subunit 16 OS=Bos taurus GN=ANAPC16 PE=3 SV=1	190.0	[0..23]	[110..23]
APC16_XENLA - Anaphase-promoting complex subunit 16 OS=Xenopus laevis GN=anapc16 PE=3 SV=1	183.0	[0..19]	[110..19]
APC16_XENTR - Anaphase-promoting complex subunit 16 OS=Xenopus tropicalis GN=anapc16 PE=3 SV=1	179.0	[0..19]	[110..19]
gi\|47217674 - gi\|47217674\|emb\|CAG13305.1\| unnamed protein product [Tetraodon nigroviridis] gi\|225704354, gi... - gi\|238231791\|ref\|NP_001154082.1\| CJ104 protein [Oncorhynchus mykiss], gi\|225705562\|gb\|ACO08627.1\| C1... gi\|225706190, gi... - gi\|225707796\|gb\|ACO09744.1\| C10orf104 homolog [Osmerus mordax], gi\|225706190\|gb\|ACO08941.1\| C10orf10... gi\|225711154 - gi\|225711154\|gb\|ACO11423.1\| UPF0448 protein C10orf104 homolog [Caligus rogercresseyi]	179.0	[0..19]	[108..19]
gi\|62531042, gi\|... - gi\|66348081\|ref\|NP_001017878.1\| hypothetical protein LOC550576 [Danio rerio], gi\|62531042\|gb\|AAH9297...	175.0	[0..19]	[108..19]
gi\|114631152 - gi\|114631152\|ref\|XP_001136981.1\| PREDICTED: hypothetical protein [Pan troglodytes]	140.0	[0..48]	[110..125]
tr\|A0A087WUN5\|A0... - Anaphase-promoting complex subunit 16 OS=Homo sapiens GN=ANAPC16 PE=4 SV=1 gi\|73952862 - gi\|73952862\|ref\|XP_861737.1\| PREDICTED: hypothetical protein XP_856644 isoform 2 [Canis familiaris]	129.0	[0..19]	[110..19]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSSSSSA GGVSGSSVTG SGFSVSDLAP PRKALFTYPK GAGEMLEDGS ERFLCESVFS  60
   61 YQVASTLKQV KHDQQVARME KLAGLVEELE ADEWRFKPIE QLLGFTPSSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.593	a.29.16	Description not found.
View	Download	0.544	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.544	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.525	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.515	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.515	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.478	a.1.1	Globin-like
View	Download	0.458	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.458	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.390	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits