YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38199129
Organism:	Corynebacterium diphtheriae
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38199129.

Description	E-value	Query Range	Subject Range
gi\|8517283 - gi\|8517283\|gb\|AAF76245.1\| putative excisionase [Arthrobacter sp. TM1]	161.0	[0..4]	[168..7]
gi\|17430264 - gi\|17430264\|emb\|CAD17027.1\| putative excisionase protein [Ralstonia solanacearum GMI1000] gi\|17547958 - gi\|17547958\|ref\|NP_521360.1\| putative excisionase protein [Ralstonia solanacearum GMI1000]	143.0	[0..1]	[148..1]
gi\|37521291, gi\|... - gi\|37521291\|ref\|NP_924668.1\| hypothetical protein glr1722 [Gloeobacter violaceus PCC 7421], gi\|35212...	139.0	[0..1]	[158..1]
gi\|36785611, gi\|... - gi\|37526181\|ref\|NP_929525.1\| hypothetical protein plu2268 [Photorhabdus luminescens subsp. laumondii...	138.0	[0..16]	[148..23]
gi\|11291440, gi\|... - gi\|3378297\|gb\|AAD03880.1\| putative excisionase [Novosphingobium aromaticivorans], pir\|\|T31156 hypoth... gi\|145322223, gi... - ref\|ZP_00302830.1\| COG1910: Periplasmic molybdate-binding protein/domain [Novosphingobium aromaticiv...	132.0	[0..10]	[148..14]
gi\|68525847, gi\|... - gi\|94311280\|ref\|YP_584490.1\| excisionase/Xis, DNA-binding [Ralstonia metallidurans CH34], gi\|9335513... gi\|126194810, gi... - gi\|84326764\|ref\|ZP_00974789.1\| COG1910: Periplasmic molybdate-binding protein/domain [Pseudomonas ae... gi\|118049819, gi... - gi\|221064742\|ref\|ZP_03540847.1\| DNA binding domain protein, excisionase family [Comamonas testostero... gi\|121593669, gi... - gi\|121593669\|ref\|YP_985565.1\| DNA binding domain-containing protein [Acidovorax sp. JS42], gi\|120605... gi\|218771612, gi... - gi\|218891386\|ref\|YP_002440253.1\| DNA binding domain, excisionase family [Pseudomonas aeruginosa LESB... gi\|24461579 - gi\|24461579\|gb\|AAN62150.1\|AF440523_57 putative excisionase [Pseudomonas aeruginosa]	131.0	[0..12]	[148..20]
gi\|94425601, gi\|... - gi\|94495335\|ref\|ZP_01301916.1\| hypothetical protein SKA58_02540 [Sphingomonas sp. SKA58], gi\|9442560...	131.0	[0..10]	[148..14]
gi\|53756961, gi\|... - gi\|53803200\|ref\|YP_115043.1\| hypothetical protein MCA2639 [Methylococcus capsulatus str. Bath], gi\|5...	129.0	[0..1]	[148..1]
gi\|111611664, gi... - gi\|121611078\|ref\|YP_998885.1\| DNA binding domain-containing protein [Verminephrobacter eiseniae EF01...	126.0	[0..12]	[148..19]
gi\|62425402 - gi\|62425402\|ref\|ZP_00380536.1\| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV...	126.0	[0..7]	[165..10]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSERTYFP PAEEGELSKV ESFLAVYKDR HGTEARPQFF LSGSNEGEQI PLPKELYEIL  60
   61 VRTVEALASG KAVTIHPNDP LVTTQQAAEL LGVSRPTVVK LIEDGKLEAT KVTRHRRIKL 120
  121 EDVLRYQERQ TIEQLDFLAS TTSDAPALTE SEYVSVRKML ANKRKESRIG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.992
Match:	1exiA
Description:	Transcription activator BmrR; Multidrug-binding domain of transcription activator BmrR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits