YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25335011
Organism:	Lactococcus lactis subsp. lactis
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25335011.

Description	E-value	Query Range	Subject Range
gi\|148263312, gi... - gi\|88937813\|ref\|ZP_01143354.1\| nitroreductase family protein [Geobacter uraniumreducens Rf4], gi\|889...	160.0	[0..1]	[202..1]
gi\|88951678, gi\|... - gi\|88951678\|ref\|ZP_01154155.1\| Nitroreductase [Methanosaeta thermophila PT], gi\|88929355\|gb\|EAR48305...	158.0	[0..1]	[202..1]
gi\|62462451 - gi\|62462451\|ref\|ZP_00381859.1\| COG3560: Predicted oxidoreductase related to nitroreductase [Lactococ...	156.0	[0..1]	[202..13]
gi\|194541372, gi... - gi\|75855076\|ref\|ZP_00762739.1\| COG0778: Nitroreductase [Vibrio sp. Ex25], gi\|254227315\|ref\|ZP_049207...	156.0	[0..1]	[201..1]
gi\|78224031, gi\|... - gi\|78224031\|ref\|YP_385778.1\| nitroreductase [Geobacter metallireducens GS-15], gi\|78195286\|gb\|ABB330...	155.0	[0..1]	[202..1]
gi\|149749440, gi... - gi\|153837300\|ref\|ZP_01989967.1\| NADPH-flavin oxidoreductase [Vibrio parahaemolyticus AQ3810], gi\|149... gi\|28810003 - gi\|28810003\|dbj\|BAC62944.1\| NADPH-flavin oxidoreductase [Vibrio parahaemolyticus RIMD 2210633] gi\|28810003, gi\|... - gi\|28901456\|ref\|NP_801111.1\| nitroreductase A [Vibrio parahaemolyticus RIMD 2210633], gi\|28810003\|db...	154.0	[0..1]	[201..1]
gi\|91191957, gi\|... - gi\|91223144\|ref\|ZP_01258410.1\| NADPH-flavin oxidoreductase [Vibrio alginolyticus 12G01], gi\|91191957...	154.0	[0..1]	[201..1]
gi\|110600504, gi... - gi\|222054060\|ref\|YP_002536422.1\| nitroreductase [Geobacter sp. FRC-32], gi\|221563349\|gb\|ACM19321.1\| ...	153.0	[0..1]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIKSLENR RTIYALGRNV QDEEKVIETI KEAVRFSPTA FNSQTGRLLI LTGDAQDKLW  60
   61 DEIVAPELKA AMEAQGVPES AWDNTRAKLD GFKAAFGTIL FFEDQAVVKN LQEQFALYAD 120
  121 NFPVWSEQGS GIISVNVWTA LAELGLGANL QHYNPLIDEA VAKEWNLPES WKLRGQLVFG 180
  181 SIEAPAGEKT FMDDADRFIV AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1ywqA
Description:	Crystal structure of a nitroreductase family protein from Bacillus cereus ATCC 14579
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.88351700678	bayes_pls_golite062009
NAD(P)H nitroreductase activity	1.73743442947569	bayes_pls_golite062009
catalytic activity	1.11149969304282	bayes_pls_golite062009
protein binding	0.385179389448981	bayes_pls_golite062009
oxidoreductase activity	0.27929339949687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: