YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25373752
Organism:	Lactococcus lactis subsp. lactis
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25373752.

Description	E-value	Query Range	Subject Range
gi\|34397059, gi\|... - gi\|34540745\|ref\|NP_905224.1\| hypothetical protein PG1001 [Porphyromonas gingivalis W83], gi\|34397059...	236.0	[0..1]	[177..1]
gi\|196197121, gi... - gi\|196253451\|ref\|ZP_03152078.1\| protein of unknown function DUF1706 [Clostridium thermocellum DSM 41... gi\|125973978, gi... - gi\|67916999\|ref\|ZP_00510680.1\| conserved hypothetical cytosolic protein [Clostridium thermocellum AT...	228.0	[0..1]	[165..1]
gi\|170717260, gi... - gi\|53728545\|ref\|ZP_00132342.2\| COG4283: Uncharacterized conserved protein [Haemophilus somnus 2336],...	225.0	[0..1]	[176..1]
gi\|25373754, gi\|... - pir\|\|AG1748 hypothetical protein lin2532 [imported] - Listeria innocua (strain Clip11262), gi\|16415... gi\|16801594 - gi\|16801594\|ref\|NP_471862.1\| hypothetical protein lin2532 [Listeria innocua Clip11262]	222.0	[0..1]	[178..1]
gi\|25010680, gi\|... - gi\|25010680\|ref\|NP_735075.1\| hypothetical protein gbs0616 [Streptococcus agalactiae NEM316], gi\|2309... gi\|76787351, gi\|... - gi\|76787351\|ref\|YP_329396.1\| hypothetical protein SAK_0769 [Streptococcus agalactiae A909], gi\|76562... gi\|77411251, gi\|... - gi\|77411251\|ref\|ZP_00787601.1\| Unknown [Streptococcus agalactiae CJB111], gi\|77162677\|gb\|EAO73638.1\|... gi\|77173651, gi\|... - gi\|77407785\|ref\|ZP_00784539.1\| Unknown [Streptococcus agalactiae COH1], gi\|77173651\|gb\|EAO76766.1\| U...	221.0	[0..1]	[175..1]
gi\|112823317, gi... - gi\|113461274\|ref\|YP_719343.1\| hypothetical protein HS_1131 [Haemophilus somnus 129PT], gi\|112823317\|...	221.0	[0..1]	[176..1]
gi\|76799172, gi\|... - gi\|76799172\|ref\|ZP_00781354.1\| conserved hypothetical protein [Streptococcus agalactiae 18RS21], gi\|... gi\|22536809, gi\|... - gi\|22536809\|ref\|NP_687660.1\| hypothetical protein SAG0636 [Streptococcus agalactiae 2603V/R], gi\|225...	221.0	[0..1]	[175..1]
gi\|116517217, gi... - gi\|116517217\|ref\|YP_816312.1\| hypothetical protein SPD_0829 [Streptococcus pneumoniae D39], gi\|11607... gi\|25335042 - pir\|\|F95108 conserved hypothetical protein SP0939 [imported] - Streptococcus pneumoniae (strain TIGR... gi\|225854444, gi... - gi\|225854444\|ref\|YP_002735956.1\| hypothetical protein SPJ_0878 [Streptococcus pneumoniae JJA], gi\|22... gi\|225725153, gi... - gi\|225856601\|ref\|YP_002738112.1\| hypothetical protein SPP_0945 [Streptococcus pneumoniae P1031], gi\|... gi\|14972415, gi\|... - gi\|66877165\|ref\|ZP_00402800.1\| COG4283: Uncharacterized conserved protein [Streptococcus pneumoniae ... gi\|183571396, gi... - gi\|183571396\|gb\|EDT91924.1\| conserved hypothetical protein [Streptococcus pneumoniae SP195], gi\|1684... gi\|149019527, gi... - gi\|149019527\|ref\|ZP_01834846.1\| hypothetical protein CGSSp23BS72_02973 [Streptococcus pneumoniae SP2... gi\|168483008, gi... - gi\|172043484\|gb\|EDT51530.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00], gi... gi\|147764900, gi... - gi\|149010419\|ref\|ZP_01831790.1\| hypothetical protein CGSSp19BS75_03672 [Streptococcus pneumoniae SP1... gi\|147928381, gi... - gi\|148992929\|ref\|ZP_01822548.1\| hypothetical protein CGSSp9BS68_07637 [Streptococcus pneumoniae SP9-... gi\|168491026, gi... - gi\|183574546\|gb\|EDT95074.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04], gi...	220.0	[0..1]	[175..1]
gi\|77411090, gi\|... - gi\|77411090\|ref\|ZP_00787443.1\| conserved hypothetical protein [Streptococcus agalactiae CJB111], gi\|...	220.0	[0..1]	[175..1]
gi\|76787481, gi\|... - gi\|76787481\|ref\|YP_329347.1\| hypothetical protein SAK_0719 [Streptococcus agalactiae A909], gi\|76562...	219.0	[0..1]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARAQSKEEL ITFSEESWQK LCSLINSLNE ETKNTNFTFK VEDKKEKHWA RDKNLRDVMV  60
   61 HLYEWHQLLI NFVEKNKRGE KTSFLPSPYN WKNYGEMNYN FQINGQKKSL SEITQQLSES 120
  121 HMKVITLIEN FSNKELFTKK YFDWTGSTSL GQYFQSSMSS HYEWAYKKIK LHKKTSEL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.61
Match:	1rxqA
Description:	YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits