YRC Public Data Repository - Protein Structure Prediction

Protein:	HIS9_LACLA
Organism:	Lactococcus lactis subsp. lactis Il1403
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIS9_LACLA.

Description	E-value	Query Range	Subject Range
gi\|76588070, gi\|... - gi\|76796566\|ref\|ZP_00778925.1\| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus ATC... gi\|241885225, gi... - gi\|241902510\|ref\|ZP_04787244.1\| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp....	197.0	[0..3]	[269..2]
gi\|114845143, gi... - gi\|167039837\|ref\|YP_001662822.1\| DNA polymerase III DnaE [Thermoanaerobacter sp. X514], gi\|166854077...	197.0	[0..3]	[269..2]
gi\|67873315, gi\|... - gi\|67873315\|ref\|ZP_00503594.1\| DNA polymerase III alpha subunit [Clostridium thermocellum ATCC 27405... gi\|196197685, gi... - gi\|196252892\|ref\|ZP_03151539.1\| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 4150...	196.0	[0..2]	[269..4]
gi\|20808235, gi\|... - gi\|20808235\|ref\|NP_623406.1\| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4], gi\|2051... gi\|20808235 - gi\|20808235\|ref\|NP_623406.1\| DNA polymerase III subunit alpha [Thermoanaerobacter tengcongensis MB4]	194.0	[0..3]	[269..5]
gi\|83573620, gi\|... - gi\|83590706\|ref\|YP_430715.1\| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073], gi\|8357362...	193.0	[0..1]	[269..1]
gi\|18309342, gi\|... - gi\|18309342\|ref\|NP_561276.1\| DNA polymerase III DnaE [Clostridium perfringens str. 13], gi\|18144018\|...	189.0	[0..2]	[269..5]
gi\|478083 - pir\|\|D47754 orf13 3' to hisIE - Lactococcus lactis subsp. lactis gi\|2565149 - gi\|2565149\|gb\|AAB81911.1\| unknown [Lactococcus lactis]	187.0	[0..1]	[269..1]
gi\|109646378, gi... - gi\|109646378\|ref\|ZP_01370282.1\| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense DCB-...	184.0	[0..1]	[269..11]
gi\|48846049, gi\|... - gi\|78222430\|ref\|YP_384177.1\| DNA polymerase III, alpha subunit [Geobacter metallireducens GS-15], gi...	184.0	[0..1]	[269..1]
gi\|78197148, gi\|... - gi\|78212689\|ref\|YP_381468.1\| DNA polymerase III subunit alpha [Synechococcus sp. CC9605], gi\|7819714...	184.0	[0..1]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLDYHFHS HFSADSEELP RKHVTEAIAH GLEEICFTEH RDFYFPGMDF SLNLPEYFQE  60
   61 INRLQAEFKD KIKIKIGLEM GIDLRFKSEI NQFIDSAPFD FVIASVHEIG DIEVYDGTEF 120
  121 YLQKIKEEAQ REYLLACLDV VQNFENYNSF GHLDYVARYG PYTDKSIKFA ENREILFEIL 180
  181 RALASKEKAL EINTRLFDDP KTEQFYSDLL INFKKLGGKF ITLGTDSHIA KRDWLSIHKA 240
  241 RTLIKKAGFH ELATFSGMKI DKNKKSIKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2hpiA
Description:	No description for 2hpiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits