YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12723999, gi\|...
Organism:	Lactococcus lactis subsp. lactis Il1403
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12723999, gi|....

Description	E-value	Query Range	Subject Range
gi\|16801633 - gi\|16801633\|ref\|NP_471901.1\| hypothetical protein lin2571 [Listeria innocua Clip11262] gi\|25516491, gi\|... - pir\|\|AF1753 Orf50 [bacteriophage bIL285] homolog lin2571 [imported] - Listeria innocua (strain Clip1...	203.0	[0..5]	[188..4]
gi\|165870680, gi... - gi\|165870680\|ref\|ZP_02215333.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|167640814, gi... - gi\|167640814\|ref\|ZP_02399073.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|167634697, gi... - gi\|167634697\|ref\|ZP_02393016.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|170127901, gi... - gi\|170707123\|ref\|ZP_02897579.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|170688606, gi... - gi\|170688606\|ref\|ZP_02879812.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|190561272, gi... - gi\|190567485\|ref\|ZP_03020398.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|172080360, gi... - gi\|177654975\|ref\|ZP_02936669.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|49183480, gi\|... - gi\|49183480\|ref\|YP_026732.1\| prophage LambdaBa04, major tail protein, putative [Bacillus anthracis s... gi\|227816654, gi... - gi\|227816654\|ref\|YP_002816663.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthraci... gi\|229603326, gi... - gi\|229603326\|ref\|YP_002865080.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthraci... gi\|254686866 - gi\|254686866\|ref\|ZP_05150724.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|254725945, gi... - gi\|254725945\|ref\|ZP_05187727.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|254738908 - gi\|254738908\|ref\|ZP_05196610.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|254744498 - gi\|254744498\|ref\|ZP_05202177.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|47777821, gi\|... - gi\|47777821\|ref\|YP_017093.2\| prophage lambdaba04, major tail protein, putative [Bacillus anthracis s... gi\|254756247 - gi\|254756247\|ref\|ZP_05208276.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|30260636, gi\|... - gi\|30260636\|ref\|NP_843013.1\| prophage LambdaBa04, major tail protein, putative [Bacillus anthracis s... gi\|254762066 - gi\|254762066\|ref\|ZP_05213915.1\| putative prophage LambdaBa04, major tail protein [Bacillus anthracis... gi\|21398425, gi\|... - gi\|65317899\|ref\|ZP_00390858.1\| hypothetical protein Bant_01001100 [Bacillus anthracis str. A2012], r...	197.0	[0..6]	[187..2]
gi\|50914479, gi\|... - gi\|50914479\|ref\|YP_060451.1\| prophage pi2 protein 39 [Streptococcus pyogenes MGAS10394], gi\|50903553... gi\|40218577, gi\|... - gi\|50261622\|gb\|AAT72390.1\| unknown [Streptococcus pyogenes], gi\|40218577\|gb\|AAR83231.1\| hypothetical...	197.0	[0..5]	[188..3]
gi\|51975297, gi\|... - gi\|52141828\|ref\|YP_085001.1\| prophage pi2 protein 39 [Bacillus cereus E33L], gi\|51975297\|gb\|AAU16847...	194.0	[0..5]	[188..2]
gi\|89153388, gi\|... - gi\|89208688\|ref\|ZP_01187181.1\| Phage major tail protein phi13 [Bacillus weihenstephanensis KBAB4], g...	190.0	[0..5]	[188..2]
gi\|67873456, gi\|... - gi\|67873456\|ref\|ZP_00503735.1\| Phage major tail protein phi13 [Clostridium thermocellum ATCC 27405],...	186.0	[0..11]	[192..5]
gi\|115334636, gi... - gi\|84688586\|gb\|ABC61282.1\| major tail protein [Geobacillus phage GBSV1], gi\|115334636\|ref\|YP_764482....	186.0	[0..1]	[191..1]
gi\|77411276, gi\|... - gi\|77411276\|ref\|ZP_00787626.1\| prophage pi2 protein 39 [Streptococcus agalactiae CJB111], gi\|7716270...	183.0	[0..5]	[189..3]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQQEKNKVE FGLENVYFAR ATTDLLSGAT TYEKPIRWPG AVELSLEASG DLIKFKADNI  60
   61 DYYISGNNQG YDGKLTTALV PEEFATKILG EVVEGGVQTE YSNVETSPFA LMFQFEG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.746	N/A	N/A	b.60.1	Lipocalins
View	Download	0.683	N/A	N/A	b.60.1	Lipocalins
View	Download	0.673	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.657	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.605	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.573	N/A	N/A	d.156.1	S-adenosylmethionine decarboxylase
View	Download	0.529	N/A	N/A	d.199.1	DNA-binding C-terminal domain of the transcription factor MotA
View	Download	0.465	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.446	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.440	N/A	N/A	b.1.1	Immunoglobulin

Predicted Domain #2

Region A:
Residues: [118-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKKATRHVLY NCSASRPSVG SSTIDKGDPN TTELSFSASP RPSDKAVKTK TRPDTEPTVY  60
   61 DAWFNSVYDK NSKTTTTTTT TTRHD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.650	b.1.18	E set domains
View	Download	0.623	b.1.18	E set domains
View	Download	0.618	b.1.18	E set domains
View	Download	0.569	d.101.1	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
View	Download	0.549	b.1.18	E set domains
View	Download	0.534	a.130.1	Chorismate mutase II
View	Download	0.450	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.357	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.348	a.60.1	SAM/Pointed domain
View	Download	0.338	c.55.4	Translational machinery components

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits