YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25401196
Organism:	Lactococcus lactis subsp. lactis
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25401196.

Description	E-value	Query Range	Subject Range
gi\|3157419 - gi\|3157419\|emb\|CAA73813.1\| YjdI-like protein [Lactococcus lactis subsp. lactis]	149.0	[0..15]	[104..1]
gi\|29377107, gi\|... - gi\|29377107\|ref\|NP_816261.1\| hypothetical protein EF2622 [Enterococcus faecalis V583], gi\|29344573\|g... gi\|229545010, gi... - gi\|229545010\|ref\|ZP_04433735.1\| conserved hypothetical protein [Enterococcus faecalis TX1332], gi\|22... gi\|229305491, gi... - gi\|229549254\|ref\|ZP_04437979.1\| conserved hypothetical protein [Enterococcus faecalis ATCC 29200], g... gi\|227176743, gi... - gi\|227554117\|ref\|ZP_03984164.1\| conserved hypothetical protein [Enterococcus faecalis HH22], gi\|2271... gi\|238830145, gi... - gi\|238857217\|ref\|ZP_04647467.1\| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11], g...	147.0	[0..15]	[104..1]
gi\|116107136, gi... - gi\|62463583\|ref\|ZP_00382906.1\| COG3592: Uncharacterized conserved protein [Lactococcus lactis subsp....	135.0	[0..15]	[103..1]
gi\|227836176, gi... - gi\|227886834\|ref\|ZP_04004639.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783617... gi\|26111373, gi\|... - gi\|26250941\|ref\|NP_756981.1\| hypothetical protein c5133 [Escherichia coli CFT073], gi\|26111373\|gb\|AA...	130.0	[0..27]	[101..2]
gi\|254879064 - gi\|254879064\|ref\|ZP_05251774.1\| YjdI protein [Listeria monocytogenes FSL J2-071] gi\|254853735 - gi\|254853735\|ref\|ZP_05243083.1\| YjdI protein [Listeria monocytogenes FSL R2-503] gi\|255520127 - gi\|255520127\|ref\|ZP_05387364.1\| YjdI protein [Listeria monocytogenes FSL J1-175] gi\|46906373, gi\|... - gi\|46906373\|ref\|YP_012762.1\| hypothetical protein LMOf2365_0151 [Listeria monocytogenes str. 4b F236... gi\|254993077 - gi\|254993077\|ref\|ZP_05275267.1\| YjdI protein [Listeria monocytogenes FSL J2-064] gi\|133728435, gi... - gi\|153165116\|ref\|ZP_01926134.1\| hypothetical protein LMHG_00949 [Listeria monocytogenes FSL N1-017],... gi\|254933068, gi... - gi\|254933068\|ref\|ZP_05266427.1\| YjdI protein [Listeria monocytogenes HPB2262], gi\|153200562\|ref\|ZP_0... gi\|47019471, gi\|... - gi\|47092269\|ref\|ZP_00230061.1\| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]... gi\|217965773, gi... - gi\|217965773\|ref\|YP_002351451.1\| hypothetical protein LMHCC_2502 [Listeria monocytogenes HCC23], gi\|... gi\|254825948 - gi\|254825948\|ref\|ZP_05230949.1\| YjdI protein [Listeria monocytogenes FSL J1-194] gi\|226222772, gi... - gi\|226222772\|ref\|YP_002756879.1\| YjdI protein [Listeria monocytogenes Clip81459], gi\|225875234\|emb\|C...	129.0	[0..26]	[101..2]
YJDI_ECOLI - Hypothetical protein yjdI - Escherichia coli gi\|13364585, gi\|... - gi\|15834362\|ref\|NP_313135.1\| hypothetical protein ECs5108 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|194437256, gi... - gi\|83587251\|ref\|ZP_00925880.1\| COG3592: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|188488716, gi... - gi\|75514887\|ref\|ZP_00737116.1\| COG3592: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|85676878, gi\|... - gi\|89110847\|ref\|AP_004627.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|238903234, gi... - gi\|238903234\|ref\|YP_002929030.1\| hypothetical protein BWG_3839 [Escherichia coli BW2952], gi\|2388605... gi\|254796148, gi... - gi\|254796148\|ref\|YP_003080985.1\| hypothetical protein ECSP_5225 [Escherichia coli O157:H7 str. TW143... EG12466 - putative 4Fe-4S mono-cluster protein / Predicted divergent 4Fe-4S mono-cluster protein YJDI_ECO57 - Uncharacterized protein YjdI OS=Escherichia coli O157:H7 GN=yjdI PE=4 SV=1 EG12466 - putative 4Fe-4S mono-cluster protein / Predicted divergent 4Fe-4S mono-cluster protein gi\|15804718, gi\|... - gi\|15804718\|ref\|NP_290759.1\| hypothetical protein Z5728 [Escherichia coli O157:H7 EDL933], gi\|125191... gi\|188017421, gi... - gi\|188017421\|gb\|EDU55543.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168760988, gi... - gi\|189368511\|gb\|EDU86927.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168755309, gi... - gi\|189357465\|gb\|EDU75884.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|187769955, gi... - gi\|187769955\|gb\|EDU33799.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189364181, gi... - gi\|189364181\|gb\|EDU82600.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|208741221, gi... - gi\|208821098\|ref\|ZP_03261418.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208813989, gi... - gi\|208813989\|ref\|ZP_03255318.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|217322539, gi... - gi\|217326318\|ref\|ZP_03442402.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209157228, gi... - gi\|209395828\|ref\|YP_002273672.1\| hypothetical protein ECH74115_5641 [Escherichia coli O157:H7 str. E... gi\|189374939, gi... - gi\|189374939\|gb\|EDU93355.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189001777, gi... - gi\|189001777\|gb\|EDU70763.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|170021876, gi... - gi\|170021876\|ref\|YP_001726830.1\| hypothetical protein EcolC_3901 [Escherichia coli ATCC 8739], gi\|16... gi\|168798200, gi... - gi\|189379176\|gb\|EDU97592.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|194419448, gi... - gi\|194432245\|ref\|ZP_03064533.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|169891410, gi... - gi\|170083575\|ref\|YP_001732895.1\| hypothetical protein ECDH10B_4318 [Escherichia coli str. K-12 subst... gi\|208809383, gi... - gi\|208809383\|ref\|ZP_03251720.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|124527780, gi... - gi\|124527780\|ref\|ZP_01699215.1\| protein of unknown function DUF1271 [Escherichia coli B], gi\|1245012... gi\|195935915 - gi\|195935915\|ref\|ZP_03081297.1\| hypothetical protein EscherichcoliO157_05530 [Escherichia coli O157:...	129.0	[0..27]	[101..2]
gi\|16799257 - gi\|16799257\|ref\|NP_469525.1\| hypothetical protein lin0180 [Listeria innocua Clip11262] gi\|16412599, gi\|... - pir\|\|AE1455 E. coli YjdI protein homolog lin0180 [imported] - Listeria innocua (strain Clip11262), g...	129.0	[0..26]	[101..2]
gi\|157069272, gi... - gi\|75197978\|ref\|ZP_00708048.1\| COG3592: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|75188843, gi\|... - gi\|75188843\|ref\|ZP_00702110.1\| COG3592: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|74314612, gi\|... - gi\|74314612\|ref\|YP_313031.1\| hypothetical protein SSON_4303 [Shigella sonnei Ss046], gi\|73858089\|gb\|...	129.0	[0..27]	[101..2]
gi\|47016549, gi\|... - gi\|47095204\|ref\|ZP_00232816.1\| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F685... gi\|153192774, gi... - gi\|254913258\|ref\|ZP_05263270.1\| YjdI protein [Listeria monocytogenes J2818], gi\|153192774\|ref\|ZP_019... gi\|153184497, gi... - gi\|254899539\|ref\|ZP_05259463.1\| YjdI protein [Listeria monocytogenes J0161], gi\|153184497\|ref\|ZP_019... gi\|254937639, gi... - gi\|254937639\|ref\|ZP_05269336.1\| YjdI protein [Listeria monocytogenes F6900], gi\|153181158\|ref\|ZP_019... gi\|255026785 - gi\|255026785\|ref\|ZP_05298771.1\| YjdI protein [Listeria monocytogenes FSL J2-003]	129.0	[0..26]	[101..2]
gi\|218367983, gi... - gi\|218561214\|ref\|YP_002394127.1\| hypothetical protein ECS88_4630 [Escherichia coli S88], gi\|21836798... gi\|91213673, gi\|... - gi\|91213673\|ref\|YP_543659.1\| hypothetical protein UTI89_C4720 [Escherichia coli UTI89], gi\|91075247\|... gi\|237703715, gi... - gi\|237703715\|ref\|ZP_04534196.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	128.0	[0..27]	[101..2]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKKNTIVN RRKKMDNSKL FGEAANEEQL LKNNYRKYRG ENMDIYYNVA ICEHAGECVR  60
   61 GNPLVFEVGR KPWIIPDNGD VASNQSVINR CPSGALKYLA KEKN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.59
Match:	1sizA
Description:	Crystal structure of the [Fe3S4]-ferredoxin from the hyperthermophilic archaeon Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits