YRC Public Data Repository - Protein Structure Prediction

Protein:	RBFA_BACHD
Organism:	Bacillus halodurans C-125
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBFA_BACHD.

Description	E-value	Query Range	Subject Range
RBFA_PELCD - Ribosome-binding factor A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rbfA PE=3 SV=1	157.0	[0..1]	[115..1]
RBFA_BACSK - Ribosome-binding factor A OS=Bacillus clausii (strain KSM-K16) GN=rbfA PE=3 SV=1	157.0	[0..1]	[115..1]
RBFA_GEOKA - Ribosome-binding factor A OS=Geobacillus kaustophilus (strain HTA426) GN=rbfA PE=3 SV=2 RBFA_GEOKA - Ribosome-binding factor A OS=Geobacillus kaustophilus GN=rbfA PE=3 SV=2	156.0	[0..3]	[115..2]
gi\|98660533 - gi\|98660533\|dbj\|GAA02246.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	156.0	[0..3]	[114..41]
RBFA_STAEP - (Q8CPG2) Ribosome-binding factor A RBFA_STAES - Ribosome-binding factor A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rbfA PE=3 SV=1 RBFA_STAEQ - Ribosome-binding factor A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rbfA PE=3 SV=...	153.0	[0..1]	[116..1]
gi\|228857283, gi... - gi\|228902314\|ref\|ZP_04066471.1\| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228909635, gi... - gi\|228909635\|ref\|ZP_04073458.1\| Ribosome-binding factor A [Bacillus thuringiensis IBL 200], gi\|22884... gi\|228836994, gi... - gi\|228922565\|ref\|ZP_04085865.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar huazhongen... gi\|228818735, gi... - gi\|228940899\|ref\|ZP_04103458.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner A... gi\|228954087, gi... - gi\|228954087\|ref\|ZP_04116116.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki s... gi\|228960027, gi... - gi\|228960027\|ref\|ZP_04121691.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani ... gi\|228792855, gi... - gi\|228966756\|ref\|ZP_04127800.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto str.... gi\|228973828, gi... - gi\|228973828\|ref\|ZP_04134404.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar thuringien... gi\|228779237, gi... - gi\|228980417\|ref\|ZP_04140727.1\| Ribosome-binding factor A [Bacillus thuringiensis Bt407], gi\|2287792... gi\|229012994, gi... - gi\|229012994\|ref\|ZP_04170159.1\| Ribosome-binding factor A [Bacillus mycoides DSM 2048], gi\|228748248... gi\|229047497, gi... - gi\|229047497\|ref\|ZP_04193087.1\| Ribosome-binding factor A [Bacillus cereus AH676], gi\|228723744\|gb\|E... gi\|229061414, gi... - gi\|229061414\|ref\|ZP_04198759.1\| Ribosome-binding factor A [Bacillus cereus AH603], gi\|228717837\|gb\|E... gi\|228711763, gi... - gi\|229071309\|ref\|ZP_04204532.1\| Ribosome-binding factor A [Bacillus cereus F65185], gi\|228711763\|gb\|... gi\|228702110, gi... - gi\|229081066\|ref\|ZP_04213576.1\| Ribosome-binding factor A [Bacillus cereus Rock4-2], gi\|228702110\|gb... gi\|228672058, gi... - gi\|229111282\|ref\|ZP_04240835.1\| Ribosome-binding factor A [Bacillus cereus Rock1-15], gi\|228672058\|g... gi\|228654324, gi... - gi\|229129087\|ref\|ZP_04258060.1\| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4], gi\|228654324\|... gi\|229134618, gi... - gi\|229134618\|ref\|ZP_04263428.1\| Ribosome-binding factor A [Bacillus cereus BDRD-ST196], gi\|228648879... gi\|229146382, gi... - gi\|229146382\|ref\|ZP_04274753.1\| Ribosome-binding factor A [Bacillus cereus BDRD-ST24], gi\|228637015\|... gi\|229152010, gi... - gi\|229152010\|ref\|ZP_04280205.1\| Ribosome-binding factor A [Bacillus cereus m1550], gi\|228631359\|gb\|E... gi\|228614956, gi... - gi\|229168550\|ref\|ZP_04296273.1\| Ribosome-binding factor A [Bacillus cereus AH621], gi\|228614956\|gb\|E... gi\|228603296, gi... - gi\|229180087\|ref\|ZP_04307431.1\| Ribosome-binding factor A [Bacillus cereus 172560W], gi\|228603296\|gb... gi\|229191980, gi... - gi\|229191980\|ref\|ZP_04318950.1\| Ribosome-binding factor A [Bacillus cereus ATCC 10876], gi\|228591531... RBFA_BACCR - Ribosome-binding factor A OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... gi\|206732419, gi... - gi\|206972662\|ref\|ZP_03233603.1\| ribosome-binding factor A [Bacillus cereus AH1134], gi\|206732419\|gb\|... RBFA_BACC4 - Ribosome-binding factor A OS=Bacillus cereus (strain B4264) GN=rbfA PE=3 SV=1 RBFA_BACWK - Ribosome-binding factor A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rbfA PE=3 SV=1 RBFA_BACC2 - Ribosome-binding factor A OS=Bacillus cereus (strain G9842) GN=rbfA PE=3 SV=1	153.0	[0..5]	[116..4]
gi\|196042166, gi... - gi\|196042166\|ref\|ZP_03109449.1\| ribosome-binding factor A [Bacillus cereus NVH0597-99], gi\|196027018... gi\|229092851, gi... - gi\|229092851\|ref\|ZP_04223985.1\| Ribosome-binding factor A [Bacillus cereus Rock3-42], gi\|228690473\|g... gi\|229186048, gi... - gi\|229186048\|ref\|ZP_04313218.1\| Ribosome-binding factor A [Bacillus cereus BGSC 6E1], gi\|228597467\|g... gi\|196044539, gi... - gi\|196044539\|ref\|ZP_03111774.1\| ribosome-binding factor A [Bacillus cereus 03BB108], gi\|196024574\|gb... RBFA_BACC3 - Ribosome-binding factor A OS=Bacillus cereus (strain 03BB102) GN=rbfA PE=3 SV=1 RBFA_BACHK - Ribosome-binding factor A OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rbfA PE=3 SV=... RBFA_BACCZ - Ribosome-binding factor A OS=Bacillus cereus (strain ZK / E33L) GN=rbfA PE=3 SV=1 RBFA_BACHK - Ribosome-binding factor A OS=Bacillus thuringiensis subsp. konkukian GN=rbfA PE=3 SV=1 RBFA_BACAH - Ribosome-binding factor A OS=Bacillus thuringiensis (strain Al Hakam) GN=rbfA PE=3 SV=1	153.0	[0..5]	[116..4]
RBFA_BACLD - Ribosome-binding factor A OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	153.0	[0..5]	[116..4]
gi\|47569088, gi\|... - gi\|47569088\|ref\|ZP_00239777.1\| ribosome-binding factor A [Bacillus cereus G9241], gi\|47554250\|gb\|EAL... gi\|228772732, gi... - gi\|228986954\|ref\|ZP_04147080.1\| Ribosome-binding factor A [Bacillus thuringiensis serovar tochigiens... gi\|228609037, gi... - gi\|229174477\|ref\|ZP_04302009.1\| Ribosome-binding factor A [Bacillus cereus MM3], gi\|228609037\|gb\|EEK... gi\|228626114, gi... - gi\|229157387\|ref\|ZP_04285465.1\| Ribosome-binding factor A [Bacillus cereus ATCC 4342], gi\|228626114\|...	153.0	[0..5]	[116..4]
RBFA_BACCN - Ribosome-binding factor A OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	153.0	[0..5]	[116..4]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVRANRVG EQMKKELSDI FMRELKDPRI EFVTVTGVDV TGDLQQANVY ITVLGDDEQK  60
   61 EATLAGLSKA KGFIRSEIGK RIRLRKTPEL FFHFDESIEY GNRIEKLLQD INRDGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.09691
Match:	1josA
Description:	Ribosome-binding factor A, RbfA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits