YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25307006
Organism:	Bacillus halodurans
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25307006.

Description	E-value	Query Range	Subject Range
gi\|58583749, gi\|... - gi\|58583749\|ref\|YP_202765.1\| hypothetical protein XOO4126 [Xanthomonas oryzae pv. oryzae KACC10331],...	160.0	[0..1]	[147..51]
gi\|7227210, gi\|1... - gi\|7227210\|gb\|AAF42280.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15677781\|... gi\|11353087 - pir\|\|H81023 conserved hypothetical protein NMB1951 [imported] - Neisseria meningitidis (strain MC58 ...	155.0	[0..1]	[147..33]
gi\|28271450, gi\|... - gi\|28378614\|ref\|NP_785506.1\| hypothetical protein lp_1972 [Lactobacillus plantarum WCFS1], gi\|282714... gi\|227856781, gi... - gi\|227894896\|ref\|ZP_04012701.1\| glutaminyl-tRNA synthase b subunit [Lactobacillus plantarum subsp. p...	151.0	[0..1]	[147..1]
gi\|67918522, gi\|... - gi\|67918522\|ref\|ZP_00512119.1\| GatB/Yqey [Chlorobium limicola DSM 245], gi\|67783841\|gb\|EAM43223.1\| G...	151.0	[0..1]	[146..54]
gi\|69245352, gi\|... - gi\|69245352\|ref\|ZP_00603396.1\| GatB/Yqey [Enterococcus faecium DO], gi\|68195882\|gb\|EAN10317.1\| GatB/...	150.0	[0..1]	[146..1]
gi\|59802430, gi\|... - gi\|59802430\|ref\|YP_209142.1\| hypothetical protein NGO2133 [Neisseria gonorrhoeae FA 1090], gi\|597193...	150.0	[0..1]	[147..33]
gi\|78221613, gi\|... - gi\|78221613\|ref\|YP_383360.1\| hypothetical protein Gmet_0392 [Geobacter metallireducens GS-15], gi\|78...	150.0	[0..3]	[147..2]
gi\|71730924, gi\|... - gi\|71899298\|ref\|ZP_00681459.1\| GatB/Yqey [Xylella fastidiosa Ann-1], gi\|71730924\|gb\|EAO32994.1\| GatB... gi\|71164360, gi\|... - gi\|71274628\|ref\|ZP_00650916.1\| GatB/Yqey [Xylella fastidiosa Dixon], gi\|71164360\|gb\|EAO14074.1\| GatB... gi\|170730893, gi... - gi\|170730893\|ref\|YP_001776326.1\| hypothetical protein Xfasm12_1805 [Xylella fastidiosa M12], gi\|1679...	150.0	[0..1]	[147..1]
gi\|116103020, gi... - gi\|48870717\|ref\|ZP_00323436.1\| COG1610: Uncharacterized conserved protein [Pediococcus pentosaceus A...	149.0	[0..1]	[147..1]
gi\|90411913, gi\|... - gi\|90411913\|ref\|ZP_01219921.1\| hypothetical protein P3TCK_01764 [Photobacterium profundum 3TCK], gi\|...	148.0	[0..1]	[146..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLDRLNQD MKEAMKNKEK EKLSVIRMVK SSLQNEQIKF GRDLTEDDQL TVLNRELKQR  60
   61 KDSLQEFEKA NREDLVEKLR NEISILEHYM PEQLSEDELL AIVNETIAEV GASSKADMGK 120
  121 VMGAIMPKVK GKADGGLVNR LVQQQLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.09691
Match:	1ng6A
Description:	Hypothetical protein YqeY
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits