YRC Public Data Repository - Protein Structure Prediction

Protein:	PHSM_ECOLI
Organism:	Escherichia coli
Length:	797 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHSM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|114681358 - gi\|114681358\|ref\|XP_525293.2\| PREDICTED: brain glycogen phosphorylase [Pan troglodytes]	965.0	[0..7]	[796..188]
gi\|18875342, gi\|... - gi\|18875342\|ref\|NP_573461.1\| liver glycogen phosphorylase [Mus musculus], gi\|15489037\|gb\|AAH13636.1\|...	963.0	[0..5]	[796..22]
PYGL_RAT - Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5	963.0	[0..5]	[796..22]
gi\|50054411, gi\|... - gi\|50054411\|ref\|NP_001001904.1\| brain glycogen phosphorylase [Xenopus (Silurana) tropicalis], gi\|463...	962.0	[0..7]	[796..24]
gi\|109093168 - gi\|109093168\|ref\|XP_001100456.1\| PREDICTED: brain glycogen phosphorylase isoform 3 [Macaca mulatta]	961.0	[0..7]	[796..24]

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Predicted Domain #1

Region A:
Residues: [1-797]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPIFNDKQ FQEALSRQWQ RYGLNSAAEM TPRQWWLAVS EALAEMLRAQ PFAKPVANQR  60
   61 HVNYISMEFL IGRLTGNNLL NLGWYQDVQD SLKAYDINLT DLLEEEIDPA LGNGGLGRLA 120
  121 ACFLDSMATV GQSATGYGLN YQYGLFRQSF VDGKQVEAPD DWHRSNYPWF RHNEALDVQV 180
  181 GIGGKVTKDG RWEPEFTITG QAWDLPVVGY RNGVAQPLRL WQATHAHPFD LTKFNDGDFL 240
  241 RAEQQGINAE KLTKVLYPND NHTAGKKLRL MQQYFQCACS VADILRRHHL AGRKLHELAD 300
  301 YEVIQLNDTH PTIAIPELLR VLIDEHQMSW DDAWAITSKT FAYTNHTLMP EALERWDVKL 360
  361 VKGLLPRHMQ IINEINTRFK TLVEKTWPGD EKVWAKLAVV HDKQVHMANL CVVGGFAVNG 420
  421 VAALHSDLVV KDLFPEYHQL WPNKFHNVTN GITPRRWIKQ CNPALAALLD KSLQKEWAND 480
  481 LDQLINLEKF ADDAKFRQQY REIKQANKVR LAEFVKVRTG IEINPQAIFD IQIKRLHEYK 540
  541 RQHLNLLHIL ALYKEIRENP QADRVPRVFL FGAKAAPGYY LAKNIIFAIN KVADVINNDP 600
  601 LVGDKLKVVF LPDYCVSAAE KLIPAADISE QISTAGKEAS GTGNMKLALN GALTVGTLDG 660
  661 ANVEIAEKVG EENIFIFGHT VEQVKAILAK GYDPVKWRKK DKVLDAVLKE LESGKYSDGD 720
  721 KHAFDQMLHS IGKQGGDPYL VMADFAAYVE AQKQVDVLYR DQEAWTRAAI LNTARCGMFS 780
  781 SDRSIRDYQA RIWQAKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1z8dA
Description:	No description for 1z8dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits