YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1788869, gi\|4...
Organism:	Escherichia coli K-12
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1788869, gi|4....

Description	E-value	Query Range	Subject Range
gi\|91211848, gi\|... - gi\|91211848\|ref\|YP_541834.1\| 3-mercaptopyruvate:cyanide sulfurtransferase [Escherichia coli UTI89], ... gi\|226901397, gi... - gi\|237705031\|ref\|ZP_04535512.1\| 3-mercaptopyruvate:cyanide sulfurtransferase [Escherichia sp. 3_2_53... gi\|117624750, gi... - gi\|117624750\|ref\|YP_853663.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli APEC O1], gi\|11...	309.0	[0..1]	[334..1]
gi\|26248886, gi\|... - gi\|26248886\|ref\|NP_754926.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli CFT073], gi\|2610...	309.0	[0..1]	[334..1]
gi\|82544970, gi\|... - gi\|82544970\|ref\|YP_408917.1\| putative thiosulfate sulfurtransferase [Shigella boydii Sb227], gi\|8124...	309.0	[0..1]	[334..1]
gi\|13362857 - gi\|13362857\|dbj\|BAB36810.1\| putative thiosulfate sulfurtransferase [Escherichia coli O157:H7 str. Sa... gi\|209763320, gi... - gi\|25288801\|pir\|\|G85896 probable thiosulfate sulfurtransferase sseA [imported] - Escherichia coli (s... gi\|12516922, gi\|... - gi\|15803048\|ref\|NP_289078.1\| putative thiosulfate sulfurtransferase [Escherichia coli O157:H7 EDL933... gi\|13362857 - gi\|13362857\|dbj\|BAB36810.1\| putative thiosulfate sulfurtransferase [Escherichia coli O157:H7]	309.0	[0..1]	[334..1]
gi\|81242052, gi\|... - gi\|82777904\|ref\|YP_404253.1\| putative thiosulfate sulfurtransferase [Shigella dysenteriae Sd197], gi...	307.0	[0..1]	[334..1]
gi\|75257945 - gi\|75257945\|ref\|ZP_00729419.1\| COG2897: Rhodanese-related sulfurtransferase [Escherichia coli E22] gi\|75211487 - gi\|75211487\|ref\|ZP_00711577.1\| COG2897: Rhodanese-related sulfurtransferase [Escherichia coli B171] gi\|75187273 - gi\|75187273\|ref\|ZP_00700540.1\| COG2897: Rhodanese-related sulfurtransferase [Escherichia coli E24377...	274.0	[0..50]	[334..1]
gi\|225852558, gi... - gi\|225852558\|ref\|YP_002732791.1\| 3-mercaptopyruvate sulfurtransferase [Brucella melitensis ATCC 2345... gi\|237815479, gi... - gi\|237815479\|ref\|ZP_04594477.1\| 3-mercaptopyruvate sulfurtransferase [Brucella abortus str. 2308 A],... gi\|225627529, gi... - gi\|225627529\|ref\|ZP_03785566.1\| 3-mercaptopyruvate sulfurtransferase [Brucella ceti str. Cudo], gi\|2... gi\|254697420 - gi\|254697420\|ref\|ZP_05159248.1\| 3-mercaptopyruvate sulfurtransferase [Brucella abortus bv. 2 str. 86... gi\|254701802 - gi\|254701802\|ref\|ZP_05163630.1\| 3-mercaptopyruvate sulfurtransferase [Brucella suis bv. 5 str. 513] gi\|254689283 - gi\|254689283\|ref\|ZP_05152537.1\| 3-mercaptopyruvate sulfurtransferase [Brucella abortus bv. 6 str. 87... gi\|254693767 - gi\|254693767\|ref\|ZP_05155595.1\| 3-mercaptopyruvate sulfurtransferase [Brucella abortus bv. 3 str. Tu... gi\|254714136 - gi\|254714136\|ref\|ZP_05175947.1\| 3-mercaptopyruvate sulfurtransferase [Brucella ceti M644/93/1] gi\|254716806 - gi\|254716806\|ref\|ZP_05178617.1\| 3-mercaptopyruvate sulfurtransferase [Brucella ceti M13/05/1] gi\|254706756 - gi\|254706756\|ref\|ZP_05168584.1\| 3-mercaptopyruvate sulfurtransferase [Brucella pinnipedialis M163/99... gi\|254710137 - gi\|254710137\|ref\|ZP_05171948.1\| 3-mercaptopyruvate sulfurtransferase [Brucella pinnipedialis B2/94] gi\|62289976, gi\|... - gi\|62289976\|ref\|YP_221769.1\| rhodanese family protein [Brucella abortus bv. 1 str. 9-941], gi\|621961... gi\|254730318 - gi\|254730318\|ref\|ZP_05188896.1\| 3-mercaptopyruvate sulfurtransferase [Brucella abortus bv. 4 str. 29... gi\|82699904 - gi\|82699904\|ref\|YP_414478.1\| thiosulfate sulfurtransferase:rhodanese-like [Brucella melitensis biova... gi\|163843322, gi... - gi\|163843322\|ref\|YP_001627726.1\| 3-mercaptopyruvate sulfurtransferase [Brucella suis ATCC 23445], gi... gi\|82616005 - gi\|82616005\|emb\|CAJ11031.1\| Thiosulfate sulfurtransferase:Rhodanese-like [Brucella melitensis biovar... gi\|189019790, gi... - gi\|189024218\|ref\|YP_001934986.1\| Thiosulfate sulfurtransferase [Brucella abortus S19], gi\|189019790\|...	274.0	[0..52]	[334..1]
gi\|83570741 - gi\|83570741\|ref\|ZP_00922184.1\| COG2897: Rhodanese-related sulfurtransferase [Shigella dysenteriae 10...	274.0	[0..50]	[334..1]
gi\|75515860 - gi\|75515860\|ref\|ZP_00737995.1\| COG2897: Rhodanese-related sulfurtransferase [Escherichia coli 53638]	273.0	[0..50]	[334..1]
gi\|161335816, gi... - gi\|161619005\|ref\|YP_001592892.1\| 3-mercaptopyruvate sulfurtransferase [Brucella canis ATCC 23365], g... gi\|23501933, gi\|... - gi\|23501933\|ref\|NP_698060.1\| rhodanese family protein [Brucella suis 1330], gi\|23347877\|gb\|AAN29975.... gi\|254704344 - gi\|254704344\|ref\|ZP_05166172.1\| 3-mercaptopyruvate sulfurtransferase [Brucella suis bv. 3 str. 686]	273.0	[0..52]	[334..1]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRENLRYVIQ YHAHTIRILV RIVAQTAKSA SFACRFSLNI RQFSLTPAKM EMPMSTTWFV  60
   61 GADWLAEHID DPEIQIIDAR MASPGQEDRN VAQEYLNGHI PGAVFFDIEA LSDHTSPLPH 120
  121 MLPRPETFAV AMRELGVNQD KHLIVYDEGN LFSAPRAWWM LRTFGVEKVS ILGGGLAGWQ 180
  181 RDDLLLEEGA VELPEGEFNA AFNPEAVVKV TDVLLASHEN TAQIIDARPA ARFNAEVDEP 240
  241 RPGLRRGHIP GALNVPWTEL VREGELKTTD ELDAIFFGRG VSYDKPIIVS CGSGVTAAVV 300
  301 LLALATLDVP NVKLYDGAWS EWGARADLPV EPVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.09691
Match:	1urhA
Description:	The "Rhodanese" fold and catalytic mechanism of 3-mercaptopyruvate sulfotransferases: Crystal structure of SseA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
thiosulfate sulfurtransferase activity	4.07143118207301	bayes_pls_golite062009
sulfurtransferase activity	2.90539767285523	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	2.27106357502695	bayes_pls_golite062009
protein tyrosine phosphatase activity	0.83774799640503	bayes_pls_golite062009
binding	0.707400650337243	bayes_pls_golite062009
catalytic activity	0.687308230067573	bayes_pls_golite062009
phosphoprotein phosphatase activity	0.604322283158386	bayes_pls_golite062009
transferase activity	0.302497611306574	bayes_pls_golite062009
protein binding	0.26324773851743	bayes_pls_golite062009
phosphatase activity	0.0565207759893606	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: