YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1788835, gi\|4...
Organism:	Escherichia coli K-12
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1788835, gi|4....

Description	E-value	Query Range	Subject Range
gi\|73856493, gi\|... - gi\|74313016\|ref\|YP_311435.1\| putative protein processing element [Shigella sonnei Ss046], gi\|7385649...	268.0	[0..1]	[158..1]
gi\|56480117, gi\|... - gi\|56480117\|ref\|NP_708329.2\| putative protein processing element [Shigella flexneri 2a str. 301], gi... gi\|110615969, gi... - gi\|110806421\|ref\|YP_689941.1\| putative protein processing element [Shigella flexneri 5 str. 8401], g... gi\|30042121, gi\|... - gi\|30063866\|ref\|NP_838037.1\| putative protein processing element [Shigella flexneri 2a str. 2457T], ...	265.0	[0..1]	[158..1]
gi\|209763608, gi... - pir\|\|D85892 hypothetical protein Z3750 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12516875, gi\|... - gi\|15803013\|ref\|NP_289043.1\| putative protein processing element [Escherichia coli O157:H7 EDL933], ... gi\|15832606, gi\|... - gi\|15832606\|ref\|NP_311379.1\| putative protein processing element [Escherichia coli O157:H7], gi\|1336... gi\|15832606, gi\|... - gi\|15832606\|ref\|NP_311379.1\| putative protein processing element [Escherichia coli O157:H7 str. Saka...	265.0	[0..1]	[158..1]
gi\|82777870, gi\|... - gi\|82777870\|ref\|YP_404219.1\| putative protein processing element [Shigella dysenteriae Sd197], gi\|81...	262.0	[0..1]	[158..1]
gi\|82544939, gi\|... - gi\|82544939\|ref\|YP_408886.1\| putative protein processing element [Shigella boydii Sb227], gi\|8124635...	262.0	[0..1]	[158..1]
gi\|75237763, gi\|... - gi\|75237763\|ref\|ZP_00721779.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Esche... gi\|157081093, gi... - gi\|75187241\|ref\|ZP_00700508.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Esche...	226.0	[0..22]	[158..1]
EG14218 - putative processing element hydrogenase 4 / Hydrogenase 4 component J; membrane protein of Hyf elect... HYFJ_ECOLI - Hydrogenase-4 component J (EC 1.-.-.-) - Escherichia coli gi\|1805549, gi\|8... - gi\|89109296\|ref\|AP_003076.1\| predicted processing element hydrogenase 4 [Escherichia coli str. K-12 ... gi\|83570707, gi\|... - gi\|83570707\|ref\|ZP_00922150.1\| COG0050: GTPases - translation elongation factors [Shigella dysenteri... gi\|238901655, gi... - gi\|238901655\|ref\|YP_002927451.1\| putative processing element hydrogenase 4 [Escherichia coli BW2952]... EG14218 - putative processing element hydrogenase 4 / Hydrogenase 4 component J; membrane protein of Hyf elect... gi\|170082100, gi... - gi\|170082100\|ref\|YP_001731420.1\| processing element hydrogenase 4 [Escherichia coli str. K-12 substr...	226.0	[0..22]	[158..1]
gi\|192927613, gi... - gi\|75257297\|ref\|ZP_00728821.1\| COG0050: GTPases - translation elongation factors [Escherichia coli E... gi\|194414689, gi... - gi\|75211457\|ref\|ZP_00711547.1\| COG0050: GTPases - translation elongation factors [Escherichia coli B...	225.0	[0..22]	[158..1]
gi\|253974365, gi... - gi\|254162464\|ref\|YP_003045572.1\| predicted processing element hydrogenase 4 [Escherichia coli B str.... gi\|75515831, gi\|... - gi\|75515831\|ref\|ZP_00737966.1\| COG0050: GTPases - translation elongation factors [Escherichia coli 5... gi\|75196498, gi\|... - gi\|75196498\|ref\|ZP_00706568.1\| COG0050: GTPases - translation elongation factors [Escherichia coli H... gi\|194437705, gi... - gi\|83586861\|ref\|ZP_00925492.1\| COG0050: GTPases - translation elongation factors [Escherichia coli 1... gi\|124499663, gi... - gi\|124529803\|ref\|ZP_01700680.1\| formate hydrogenlyase maturation HycH [Escherichia coli B], gi\|12449... gi\|169754154, gi... - gi\|170019226\|ref\|YP_001724180.1\| formate hydrogenlyase maturation HycH [Escherichia coli ATCC 8739],... gi\|254289225, gi... - gi\|254289225\|ref\|YP_003054973.1\| predicted processing element hydrogenase 4 [Escherichia coli BL21(D... gi\|251785815, gi... - gi\|251785815\|ref\|YP_003000119.1\| hypothetical protein B21_02344 [Escherichia coli BL21], gi\|24237808...	225.0	[0..22]	[157..1]
gi\|77973839 - gi\|77973839\|ref\|ZP_00829383.1\| COG1429: Cobalamin biosynthesis protein CobN and related Mg-chelatase...	224.0	[0..27]	[156..3]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTIHVSIVS FSNSFAYSGG YMTEECGEIV FWTLRKKFVA SSDEMPEHSS QVMYYSLAIG  60
   61 HHVGVIDCLN VAFRCPLTEY EDWLALVEEE QARRKMLGVM TFGEIVIDAS HTALLTRAFA 120
  121 PLADDATSVW QARSIQFIHL LDEIVQEPAI YLMARKIA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	103.958607
Match:	PF07450.2
Description:	No description for PF07450.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.576	0.378	oxidoreductase activity	a.1.1	Globin-like
View	Download	0.625	0.003	oxidoreductase activity	a.133.1	Phospholipase A2, PLA2
View	Download	0.591	0.001	oxidoreductase activity	a.22.1	Histone-fold
View	Download	0.589	0.001	oxidoreductase activity	c.46.1	Rhodanese/Cell cycle control phosphatase
View	Download	0.584	N/A	N/A	c.46.1	Rhodanese/Cell cycle control phosphatase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits