YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7460138
Organism:	Escherichia coli
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7460138.

Description	E-value	Query Range	Subject Range
gi\|81241815, gi\|... - gi\|82777667\|ref\|YP_404016.1\| putative transport/receptor protein [Shigella dysenteriae Sd197], gi\|81...	213.0	[0..1]	[222..1]
gi\|81246151, gi\|... - gi\|82544740\|ref\|YP_408687.1\| putative transport/receptor protein [Shigella boydii Sb227], gi\|8124615...	212.0	[0..1]	[222..1]
gi\|209765322, gi... - gi\|25338016\|pir\|\|B85866 probable transport/receptor protein ECs3146 [imported] - Escherichia coli (s... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7 str. Sakai... gi\|12516605, gi\|... - gi\|15802808\|ref\|NP_288835.1\| hypothetical protein Z3517 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7]	210.0	[0..1]	[222..1]
gi\|30041945, gi\|... - gi\|30063690\|ref\|NP_837861.1\| hypothetical protein S2471 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|24052693, gi\|... - gi\|24113634\|ref\|NP_708144.1\| hypothetical protein SF2337 [Shigella flexneri 2a str. 301], gi\|2405269...	209.0	[0..1]	[222..1]
gi\|218365944, gi... - gi\|218559175\|ref\|YP_002392088.1\| hypothetical protein ECS88_2409 [Escherichia coli S88], gi\|21836594... gi\|91073127, gi\|... - gi\|91211553\|ref\|YP_541539.1\| hypothetical protein UTI89_C2541 [Escherichia coli UTI89], gi\|91073127\|... gi\|117624451, gi... - gi\|117624451\|ref\|YP_853364.1\| hypothetical protein APECO1_4303 [Escherichia coli APEC O1], gi\|115513...	204.0	[0..1]	[222..1]
gi\|26109052, gi\|... - gi\|26248647\|ref\|NP_754687.1\| hypothetical protein c2801 [Escherichia coli CFT073], gi\|26109052\|gb\|AA...	199.0	[0..1]	[222..1]
gi\|22125816, gi\|... - gi\|22125816\|ref\|NP_669239.1\| hypothetical protein y1923 [Yersinia pestis KIM], gi\|21958743\|gb\|AAM854...	102.0	[0..76]	[219..1]
gi\|60468239 - gi\|60468239\|gb\|EAL66249.1\| hypothetical protein DDB0218390 [Dictyostelium discoideum] gi\|60468239, gi\|... - gi\|66811874\|ref\|XP_640116.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468239\|gb\|EAL...	98.0	[0..96]	[218..617]
gi\|77975268 - gi\|77975268\|ref\|ZP_00830804.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	97.0	[0..94]	[219..1]
gi\|78518557, gi\|... - gi\|78693002\|ref\|ZP_00857516.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851855...	96.0	[0..88]	[218..33]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETGNLLCG DKQTAQTYRA VAGTGAGLSW SCHGALAAGL AERTGRHCLP DVKSEFCLGD  60
   61 AGCSKTVART GIAASLVWGG VHYWRHC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.592	a.4.1	Homeodomain-like
View	Download	0.637	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.652	a.74.1	Cyclin-like
View	Download	0.562	a.51.1	Cytochrome c oxidase subunit h
View	Download	0.504	a.44.1	Disulphide-bond formation facilitator (DSBA), insertion domain

Predicted Domain #2

Region A:
Residues: [88-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPREYGVMGL MWGLFSVIIA SVAQLSLGFA ASHLPPMTHL WDFIAALLAF GLDARILLLG  60
   61 LLGYLLSVFC WYKTLHKLAL SKAYALLSMS YVLVWIASMV LPGWEGTFSL KALLGVACIM 120
  121 SGLMLIFLPT TKQRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits