YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7466285
Organism:	Escherichia coli
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7466285.

Description	E-value	Query Range	Subject Range
gi\|74312605, gi\|... - gi\|74312605\|ref\|YP_311024.1\| hypothetical protein SSON_2133 [Shigella sonnei Ss046], gi\|73856082\|gb\|... gi\|82543454, gi\|... - gi\|82543454\|ref\|YP_407401.1\| hypothetical protein SBO_0906 [Shigella boydii Sb227], gi\|81244865\|gb\|A...	165.0	[0..1]	[123..1]
gi\|91072942, gi\|... - gi\|91211368\|ref\|YP_541354.1\| hypothetical protein UTI89_C2355 [Escherichia coli UTI89], gi\|91072942\|... gi\|237704537, gi... - gi\|237704537\|ref\|ZP_04535018.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117624276, gi... - gi\|117624276\|ref\|YP_853189.1\| hypothetical protein APECO1_1170 [Escherichia coli APEC O1], gi\|115513... gi\|26108859, gi\|... - gi\|26248454\|ref\|NP_754494.1\| hypothetical protein c2606 [Escherichia coli CFT073], gi\|26108859\|gb\|AA...	165.0	[0..1]	[123..1]
gi\|25358971, gi\|... - pir\|\|C85835 hypothetical protein Z3249 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12516289, gi\|... - gi\|15802561\|ref\|NP_288588.1\| hypothetical protein Z3249 [Escherichia coli O157:H7 EDL933], gi\|125162... gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	164.0	[0..1]	[123..1]
gi\|21958152, gi\|... - gi\|22125279\|ref\|NP_668702.1\| hypothetical protein y1380 [Yersinia pestis KIM], gi\|21958152\|gb\|AAM849... gi\|45442493, gi\|... - gi\|45442493\|ref\|NP_994032.1\| hypothetical protein YP_2720 [Yersinia pestis biovar Microtus str. 9100...	164.0	[0..1]	[123..4]
gi\|30063525, gi\|... - gi\|30063525\|ref\|NP_837696.1\| hypothetical protein S2270 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|110806050, gi... - gi\|110806050\|ref\|YP_689570.1\| hypothetical protein SFV_2141 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24113462, gi\|... - gi\|24113462\|ref\|NP_707972.1\| hypothetical protein SF2145 [Shigella flexneri 2a str. 301], gi\|2405249...	164.0	[0..1]	[123..1]
gi\|49529919, gi\|... - gi\|50083943\|ref\|YP_045453.1\| hypothetical protein ACIAD0721 [Acinetobacter sp. ADP1], gi\|49529919\|em...	157.0	[0..13]	[123..1]
gi\|82703287, gi\|... - gi\|82703287\|ref\|YP_412853.1\| hypothetical protein Nmul_A2168 [Nitrosospira multiformis ATCC 25196], ...	156.0	[0..14]	[123..1]
gi\|238723727, gi... - gi\|77974643\|ref\|ZP_00830182.1\| COG3422: Uncharacterized conserved protein [Yersinia frederiksenii AT...	154.0	[0..13]	[123..1]
YEGP_PSEST - (O69049) Hypothetical 12.7 kDa protein in ptx operon 5'region (ORF117)	152.0	[0..10]	[121..2]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSIHNFNQ GVIMAGWFEL SKSSDNQFRF VLKAGNGETI LTSELYTSKT SAEKGIASVR  60
   61 SNSPQEERYE KKTASNGKFY FNLKAANHQI IGSSQMYATA QSRETGIASV KANGTSQTVK 120
  121 DNT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits