YRC Public Data Repository - Protein Structure Prediction

Protein:	INTG_ECOLI
Organism:	Escherichia coli
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INTG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25390941, gi\|... - pir\|\|C85811 hypothetical protein Z3024 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|13362143, gi\|... - gi\|15831929\|ref\|NP_310702.1\| hypothetical protein ECs2675 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|15802371, gi\|... - gi\|15802371\|ref\|NP_288397.1\| hypothetical protein Z3024 [Escherichia coli O157:H7 EDL933], gi\|125160... INTG_ECO57 - Putative lambdoid prophage defective integrase OS=Escherichia coli O157:H7 GN=intG PE=3 SV=1	138.0	[0..1]	[92..1]
gi\|75209455, gi\|... - gi\|75209455\|ref\|ZP_00709683.1\| COG0582: Integrase [Escherichia coli B171], gi\|194429305\|ref\|ZP_03061...	95.0	[0..4]	[58..374]
gi\|7649821 - gi\|7649821\|dbj\|BAA94099.1\| integrase [Enterobacteria phage VT2-Sakai] gi\|9632467, gi\|4... - gi\|9632467\|ref\|NP_049461.1\| integrase [Enterobacteria phage 933W], gi\|4585378\|gb\|AAD25406.1\|AF125520... gi\|25323726 - pir\|\|E85636 integrase for bacteriophage BP-933W [imported] - Escherichia coli (strain O157:H7, subst... gi\|32171084, gi\|... - gi\|32171084\|ref\|NP_859328.1\| hypothetical protein Stx2IIp083 [Stx2 converting phage II], gi\|32128262... gi\|19911669, gi\|... - gi\|20065877\|ref\|NP_612960.1\| hypothetical protein Stx2Ip082 [Stx2 converting phage I], gi\|19911669\|d... gi\|217325763, gi... - gi\|217325763\|ref\|ZP_03441847.1\| integrase [Escherichia coli O157:H7 str. TW14588], gi\|217321984\|gb\|E... gi\|9633397, gi\|5... - gi\|9633397\|ref\|NP_050500.1\| integrase [Enterobacteria phage VT2-Sakai], gi\|5881593\|dbj\|BAA84284.1\| i... gi\|189404277, gi... - gi\|189404277\|ref\|ZP_03007394.1\| Int protein [Escherichia coli O157:H7 str. EC4501], gi\|189366603\|gb\|... gi\|32170917, gi\|... - gi\|32170917\|ref\|NP_859162.1\| hypothetical protein Stx1p084 [Stx1 converting phage], gi\|32128095\|dbj\|... gi\|12514276, gi\|... - gi\|15800926\|ref\|NP_286942.1\| integrase for bacteriophage BP-933W [Escherichia coli O157:H7 EDL933], ...	94.0	[0..4]	[60..382]
gi\|170783610, gi... - gi\|170783610\|ref\|YP_001648892.1\| integrase [Enterobacteria phage Min27], gi\|163955704\|gb\|ABY49854.1\|... gi\|15830414, gi\|... - gi\|15830414\|ref\|NP_309187.1\| putative integrase [Escherichia coli O157:H7 str. Sakai], gi\|13360620\|d... gi\|15830414, gi\|... - gi\|15830414\|ref\|NP_309187.1\| putative integrase [Escherichia coli O157:H7], gi\|13360620\|dbj\|BAB34583... gi\|25323720 - pir\|\|H90773 probable integrase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952...	93.0	[0..4]	[60..374]
gi\|18249865, gi\|... - gi\|18249865\|ref\|NP_543053.1\| putative integrase [Enterobacteria phage phiP27], gi\|18152332\|emb\|CAC83...	92.0	[0..4]	[58..374]
gi\|188492593, gi... - gi\|75513013\|ref\|ZP_00735475.1\| COG0582: Integrase [Escherichia coli 53638], gi\|188492593\|ref\|ZP_0299...	90.0	[0..4]	[58..374]
gi\|16129537, gi\|... - gi\|1787861\|gb\|AAC74651.1\| Qin prophage; predicted defective integrase [Escherichia coli K12], gi\|161... gi\|7449509 - gi\|7449509\|pir\|\|E64913 hypothetical protein b1579 - Escherichia coli (strain K-12) cryptic prophage/...	90.0	[0..4]	[53..343]
gi\|85675030, gi\|... - gi\|89108420\|ref\|AP_002200.1\| predicted defective integrase [Escherichia coli str. K-12 substr. W3110...	90.0	[0..4]	[53..343]
gi\|9910723\|sp\|P7... - Putative lambdoid prophage Qin defective integrase (Fragment) OS=Escherichia coli (strain K12) GN=in... INTQ_ECOLI - Putative lambdoid prophage Qin defective integrase (Fragment) - Escherichia coli	90.0	[0..4]	[53..330]
gi\|16759873 - gi\|16759873\|ref\|NP_455490.1\| integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi\|25323732, gi\|... - gi\|25323732\|pir\|\|AC0617 integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (st... gi\|29142354, gi\|... - gi\|29142354\|ref\|NP_805696.1\| integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2],...	88.0	[0..4]	[55..391]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVTTSDVVM CQMRRSDVQG GYRVYGSWMA ENVQDQVSIL NQKLSEFAPS MPHAVRSDVI  60
   61 NNRLQNLHLH AHHFLIRRHQ LITHLNPHLH RN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits