YRC Public Data Repository - Protein Structure Prediction

Protein:	FLID_ECOLI
Organism:	Escherichia coli
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLID_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37525876, gi\|... - gi\|37525876\|ref\|NP_929220.1\| flagellar capping protein [Photorhabdus luminescens subsp. laumondii TT...	368.0	[0..1]	[460..1]
gi\|67677287, gi\|... - gi\|92114155\|ref\|YP_574083.1\| flagellar hook-associated 2-like protein [Chromohalobacter salexigens D...	361.0	[0..1]	[467..1]
gi\|78701922, gi\|... - gi\|78701922\|ref\|ZP_00866368.1\| flagellar hook-associated protein 2 [Alkalilimnicola ehrlichei MLHE-1...	360.0	[0..1]	[467..1]
gi\|117307392, gi... - gi\|73532522\|dbj\|BAE19819.1\| flagella (r) hook associated protein HAP2 [Edwardsiella tarda], gi\|11730...	359.0	[0..1]	[468..1]
FLID_XENNE - Flagellar hook-associated protein 2 OS=Xenorhabdus nematophila GN=fliD PE=3 SV=3	355.0	[0..1]	[461..1]
gi\|75255523, gi\|... - gi\|75255523\|ref\|ZP_00727315.1\| COG1345: Flagellar capping protein [Escherichia coli E22], gi\|1930663... gi\|75208828, gi\|... - gi\|75208828\|ref\|ZP_00709112.1\| COG1345: Flagellar capping protein [Escherichia coli B171], gi\|194429...	346.0	[0..1]	[467..1]
gi\|30138927, gi\|... - gi\|30249564\|ref\|NP_841634.1\| flagellar hook-associated protein 2 [Nitrosomonas europaea ATCC 19718],...	343.0	[0..4]	[466..2]
gi\|112820172 - gi\|112820172\|gb\|ABI23967.1\| FliD [Escherichia coli]	342.0	[0..1]	[467..1]
gi\|51894113, gi\|... - gi\|51894113\|ref\|YP_076804.1\| flagellar hook-associated protein [Symbiobacterium thermophilum IAM 148...	341.0	[0..2]	[468..1]
gi\|71484198, gi\|... - gi\|71550598\|ref\|ZP_00670699.1\| Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associ...	341.0	[0..4]	[466..2]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASISSLGVG SGLDLSSILD SLTAAQKATL TPISNQQSSF TAKLSAYGTL KSALTTFQTA  60
   61 NTALSKADLF SATSTTSSTT AFSATTAGNA IAGKYTISVT HLAQAQTLTT RTTRD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.107905
Match:	PF02465.9
Description:	No description for PF02465.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTKTAIATSD SKLTIQQGGD KDPITIDISA ANSSLSGIRD AINNAKAGVS ASIINVGNGE  60
   61 YRLSVTSNDT GLDNAMTLSV SGDDALQSFM GYDASASSNG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.657577
Match:	PF07196.4
Description:	No description for PF07196.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [216-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVSVAAQNA QLTVNNVAIE NSSNTISDAL ENITLNLNDV TTGNQTLTIT QDTSKAQTAI  60
   61 KDWVNAYNSL IDTFSSLTKY TAVDAGADSQ SSSNGALLGD STLRTIQTQL KSMLSNTVSS 120
  121 SSYKTLAQIG ITTDPSDGKL ELDADKLTAA LKKDASGVGA LIVGDGKKTG ITTTIGSNLT 180
  181 SWLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [400-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTGIIKAATD GVSKTLNKLT KDYNAASDRI DAQVARYKEQ FTQLDVLMTS LNSTSSYLTQ  60
   61 QFENNSNSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits