YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49176149, gi\|...
Organism:	Escherichia coli K-12
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49176149, gi|....

Description	E-value	Query Range	Subject Range
gi\|157154792, gi... - gi\|75190811\|ref\|ZP_00704078.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Esche...	287.0	[0..1]	[301..1]
gi\|75255301 - gi\|75255301\|ref\|ZP_00727134.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Esche... gi\|75210257 - gi\|75210257\|ref\|ZP_00710425.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Esche...	286.0	[0..1]	[301..1]
gi\|83586080 - gi\|83586080\|ref\|ZP_00924718.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Esche...	284.0	[0..1]	[301..1]
gi\|73855386, gi\|... - gi\|74311909\|ref\|YP_310328.1\| hypothetical protein SSON_1382 [Shigella sonnei Ss046], gi\|73855386\|gb\|...	284.0	[0..1]	[301..1]
gi\|187427590, gi... - gi\|187730598\|ref\|YP_001880570.1\| aldose 1-epimerase family protein [Shigella boydii CDC 3083-94], gi... gi\|81245232, gi\|... - gi\|82543821\|ref\|YP_407768.1\| hypothetical protein SBO_1313 [Shigella boydii Sb227], gi\|81245232\|gb\|A...	283.0	[0..1]	[301..1]
gi\|115513074, gi... - gi\|117623950\|ref\|YP_852863.1\| hypothetical protein APECO1_848 [Escherichia coli APEC O1], gi\|1155130... gi\|237705732, gi... - gi\|237705732\|ref\|ZP_04536213.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91210997, gi\|... - gi\|91210997\|ref\|YP_540983.1\| hypothetical protein UTI89_C1976 [Escherichia coli UTI89], gi\|91072571\|...	283.0	[0..1]	[301..1]
gi\|26248039, gi\|... - gi\|26248039\|ref\|NP_754079.1\| hypothetical protein c2185 [Escherichia coli CFT073], gi\|26108442\|gb\|AA... gi\|227837365, gi... - gi\|227885792\|ref\|ZP_04003597.1\| aldose 1-epimerase family protein [Escherichia coli 83972], gi\|22783...	282.0	[0..1]	[301..1]
gi\|25348237, gi\|... - pir\|\|E85788 hypothetical protein yeaD [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802194, gi\|... - gi\|15802194\|ref\|NP_288216.1\| hypothetical protein Z2820 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|13361956 - gi\|13361956\|dbj\|BAB35912.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|13361956 - gi\|13361956\|dbj\|BAB35912.1\| hypothetical protein [Escherichia coli O157:H7]	280.0	[0..1]	[301..1]
gi\|81240916, gi\|... - gi\|82776768\|ref\|YP_403117.1\| hypothetical protein SDY_1487 [Shigella dysenteriae Sd197], gi\|81240916...	278.0	[0..1]	[301..1]
gi\|75236753, gi\|... - gi\|75236753\|ref\|ZP_00720824.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Esche... gi\|218554348, gi... - gi\|218554348\|ref\|YP_002387261.1\| hypothetical protein ECIAI1_1844 [Escherichia coli IAI1], gi\|218361... gi\|218695339, gi... - gi\|218695339\|ref\|YP_002403006.1\| hypothetical protein EC55989_1949 [Escherichia coli 55989], gi\|2183... gi\|194413379, gi... - gi\|194428501\|ref\|ZP_03061040.1\| aldose 1-epimerase family protein [Escherichia coli B171], gi\|194413... gi\|209919142, gi... - gi\|209919142\|ref\|YP_002293226.1\| hypothetical protein ECSE_1951 [Escherichia coli SE11], gi\|20991240... gi\|193066578, gi... - gi\|193066578\|ref\|ZP_03047617.1\| aldose 1-epimerase family protein [Escherichia coli E22], gi\|1929257...	272.0	[0..8]	[301..1]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKDCVMIK KIFALPVIEQ ISPVLSRRKL DELDLIVVDH PQVKASFALQ GAHLLSWKPA  60
   61 GEEEVLWLSN NTPFKNGVAI RGGVPVCWPW FGPAAQQGLP AHGFARNLPW TLKSHHEDAD 120
  121 GVALTFELTQ SEETKKFWPH DFTLLAHFRV GKTCEIDLES HGEFETTSAL HTYFNVGDIA 180
  181 KVSVSGLGDR FIDKVNDAKE NVLTDGIQTF PDRTDRVYLN PQDCSVINDE ALNRIIAVGH 240
  241 QHHLNVVGWN PGPALSISMG DMPDDGYKTF VCVETAYASE TQKVTKEKPA HLAQSIRVAK 300
  301 R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.522879
Match:	2htaA
Description:	No description for 2htaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits