YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16129555, gi\|...
Organism:	Escherichia coli K-12
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16129555, gi|....

Description	E-value	Query Range	Subject Range
gi\|192927428, gi... - gi\|75257016\|ref\|ZP_00728576.1\| hypothetical protein EcolE2_01003066 [Escherichia coli E22], gi\|19306... gi\|194426120, gi... - gi\|75212934\|ref\|ZP_00712932.1\| hypothetical protein EcolB_01000316 [Escherichia coli B171], gi\|19442...	68.0	[0..1]	[99..1]
gi\|110805570, gi... - gi\|110805570\|ref\|YP_689090.1\| acid shock protein precursor [Shigella flexneri 5 str. 8401], gi\|11061... gi\|75190637, gi\|... - gi\|75190637\|ref\|ZP_00703904.1\| hypothetical protein EcolE_01003947 [Escherichia coli E24377A], gi\|15... gi\|192959653, gi... - gi\|75239760\|ref\|ZP_00723721.1\| hypothetical protein EcolE1_01000007 [Escherichia coli E110019], gi\|1... gi\|82776834, gi\|... - gi\|82776834\|ref\|YP_403183.1\| acid shock protein [Shigella dysenteriae Sd197], gi\|81240982\|gb\|ABB6169...	63.0	[0..1]	[99..1]
gi\|24112984, gi\|... - gi\|24112984\|ref\|NP_707494.1\| acid shock protein precursor [Shigella flexneri 2a str. 301], gi\|240519... gi\|30063111, gi\|... - gi\|30063111\|ref\|NP_837282.1\| acid shock protein precursor [Shigella flexneri 2a str. 2457T], gi\|3004...	63.0	[0..1]	[99..1]
gi\|190904034, gi... - gi\|75230954\|ref\|ZP_00717403.1\| hypothetical protein EcolB7_01000935 [Escherichia coli B7A], gi\|19116...	62.0	[0..1]	[99..1]
gi\|83587932, gi\|... - gi\|83587932\|ref\|ZP_00926558.1\| hypothetical protein Ecol1_01000965 [Escherichia coli 101-1], gi\|1944...	62.0	[0..1]	[99..1]
gi\|81245447, gi\|... - gi\|82544036\|ref\|YP_407983.1\| acid shock protein [Shigella boydii Sb227], gi\|81245447\|gb\|ABB66155.1\| ... gi\|75178508, gi\|... - gi\|75178508\|ref\|ZP_00698554.1\| hypothetical protein SboyB_01001428 [Shigella boydii BS512], gi\|18773...	57.0	[0..1]	[99..1]
gi\|161486484 - gi\|161486484\|ref\|NP_837282.2\| acid shock protein precursor [Shigella flexneri 2a str. 2457T] gi\|161485907 - gi\|161485907\|ref\|NP_707494.2\| acid shock protein precursor [Shigella flexneri 2a str. 301] ASR_SHIFL - Acid shock protein OS=Shigella flexneri GN=asr PE=3 SV=2	53.0	[0..10]	[99..1]
gi\|25390812, gi\|... - gi\|25497866\|pir\|\|D85765 acid shock protein [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12515575, gi\|... - gi\|15802011\|ref\|NP_288032.1\| acid shock protein precursor [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|13361770, gi\|... - gi\|15831557\|ref\|NP_310330.1\| acid shock protein precursor [Escherichia coli O157:H7], gi\|13361770\|db... gi\|157066737, gi... - gi\|75195677\|ref\|ZP_00705747.1\| hypothetical protein EcolH_01001475 [Escherichia coli HS], gi\|1571610... gi\|13361770, gi\|... - gi\|15831557\|ref\|NP_310330.1\| acid shock protein precursor [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195938986 - gi\|195938986\|ref\|ZP_03084368.1\| hypothetical protein EscherichcoliO157_21592 [Escherichia coli O157:... gi\|189376920, gi... - gi\|189406037\|ref\|ZP_02825859.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC508], gi\|... gi\|208731132, gi... - gi\|208816789\|ref\|ZP_03257909.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208810759, gi... - gi\|208810759\|ref\|ZP_03252635.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|209396210, gi... - gi\|209396210\|ref\|YP_002270669.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4115], g... gi\|208819269, gi... - gi\|208819269\|ref\|ZP_03259589.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|188025032, gi... - gi\|188025032\|ref\|ZP_02775617.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4113], gi... gi\|187776149, gi... - gi\|187776149\|ref\|ZP_02800829.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4196], gi... gi\|189355565, gi... - gi\|189402451\|ref\|ZP_02782499.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4401], gi... gi\|189010654, gi... - gi\|189010654\|ref\|ZP_02808422.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4076], gi... gi\|189370969, gi... - gi\|189405280\|ref\|ZP_02814436.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189403670, gi... - gi\|189403670\|ref\|ZP_02797087.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4486], gi...	46.0	[0..1]	[84..1]
gi\|191174324, gi... - gi\|75236692\|ref\|ZP_00720771.1\| hypothetical protein EcolF_01004155 [Escherichia coli F11], gi\|191174... gi\|83570969 - gi\|83570969\|ref\|ZP_00922411.1\| hypothetical protein Sdys1_01000799 [Shigella dysenteriae 1012] gi\|227836975, gi... - gi\|227886046\|ref\|ZP_04003851.1\| acid shock protein precursor [Escherichia coli 83972], gi\|227836975\|... gi\|91072381, gi\|... - gi\|91210807\|ref\|YP_540793.1\| acid shock protein precursor [Escherichia coli UTI89], gi\|91072381\|gb\|A... gi\|237705536, gi... - gi\|237705536\|ref\|ZP_04536017.1\| predicted protein [Escherichia sp. 3_2_53FAA], gi\|226900293\|gb\|EEH86... gi\|26108246, gi\|... - gi\|26247843\|ref\|NP_753883.1\| acid shock protein precursor [Escherichia coli CFT073], gi\|26108246\|gb\|... gi\|115512907, gi... - gi\|117623783\|ref\|YP_852696.1\| acid shock protein precursor [Escherichia coli APEC O1], gi\|115512907\|...	45.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQIEGMTM KKVLALVVAA AMGLSSAAFA AETTTTPAPT ATTTKAAPAK TTHHKKQHKA  60
   61 APAQKAQAAK KHHKNTKAEQ KAPEQKAQAA KKHAKKHSHQ QPAKPAAQPA A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits