YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7449509
Organism:	Escherichia coli
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7449509.

Description	E-value	Query Range	Subject Range
gi\|85675030, gi\|... - gi\|89108420\|ref\|AP_002200.1\| predicted defective integrase [Escherichia coli str. K-12 substr. W3110...	246.0	[0..1]	[398..1]
gi\|9910723\|sp\|P7... - Putative lambdoid prophage Qin defective integrase (Fragment) OS=Escherichia coli (strain K12) GN=in... INTQ_ECOLI - Putative lambdoid prophage Qin defective integrase (Fragment) - Escherichia coli	238.0	[0..14]	[398..1]
gi\|169257156 - gi\|169257156\|ref\|YP_001700534.1\| putative bacteriophage integrase [Salmonella phage Fels-1] gi\|16764254, gi\|... - gi\|16764254\|ref\|NP_459869.1\| putative integrase [Salmonella typhimurium LT2], gi\|16419401\|gb\|AAL1982...	230.0	[0..3]	[398..44]
gi\|16759873 - gi\|16759873\|ref\|NP_455490.1\| integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi\|25323732, gi\|... - gi\|25323732\|pir\|\|AC0617 integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (st... gi\|29142354, gi\|... - gi\|29142354\|ref\|NP_805696.1\| integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2],...	225.0	[0..2]	[396..50]
gi\|62127166, gi\|... - gi\|62179533\|ref\|YP_215950.1\| Gifsy-2 prophage integrase [Salmonella enterica subsp. enterica serovar...	219.0	[0..2]	[392..34]
gi\|168771590, gi... - gi\|189359693\|gb\|EDU78112.1\| Int protein [Escherichia coli O157:H7 str. EC4486], gi\|168771590\|ref\|ZP_... gi\|189365748, gi... - gi\|189365748\|gb\|EDU84164.1\| Int protein [Escherichia coli O157:H7 str. EC4501], gi\|168764215\|ref\|ZP_... gi\|189355343, gi... - gi\|189355343\|gb\|EDU73762.1\| Int protein [Escherichia coli O157:H7 str. EC4401], gi\|168757698\|ref\|ZP_... gi\|168750496, gi... - gi\|188015313\|gb\|EDU53435.1\| Int protein [Escherichia coli O157:H7 str. EC4113], gi\|168750496\|ref\|ZP_... gi\|195935496 - gi\|195935496\|ref\|ZP_03080878.1\| putative integrase [Escherichia coli O157:H7 str. EC4024] gi\|168801195, gi... - gi\|189376649\|gb\|EDU95065.1\| Int protein [Escherichia coli O157:H7 str. EC508], gi\|168801195\|ref\|ZP_0... gi\|188999025, gi... - gi\|188999025\|gb\|EDU68011.1\| Int protein [Escherichia coli O157:H7 str. EC4076], gi\|168783694\|ref\|ZP_... gi\|187767430, gi... - gi\|187767430\|gb\|EDU31274.1\| Int protein [Escherichia coli O157:H7 str. EC4196], gi\|168777298\|ref\|ZP_... gi\|11875147\|dbj\|... - integrase [Escherichia coli O157:H7] gi\|13362482, gi\|... - gi\|15832267\|ref\|NP_311040.1\| putative integrase [Escherichia coli O157:H7 str. Sakai], gi\|13362482\|d... gi\|13362482, gi\|... - gi\|15832267\|ref\|NP_311040.1\| putative integrase [Escherichia coli O157:H7], gi\|13362482\|dbj\|BAB36436... gi\|209157328, gi... - gi\|209395928\|ref\|YP_002271528.1\| Int protein [Escherichia coli O157:H7 str. EC4115], gi\|209157328\|gb... gi\|25323728, gi\|... - pir\|\|F85849 probable integrase for prophage CP-933V intV [imported] - Escherichia coli (strain O157:... gi\|208821835, gi... - gi\|208821835\|ref\|ZP_03262155.1\| Int protein [Escherichia coli O157:H7 str. EC4042], gi\|208741958\|gb\|... gi\|254794018, gi... - gi\|254794018\|ref\|YP_003078855.1\| putative integrase for prophage CP-933V [Escherichia coli O157:H7 s... gi\|208734931, gi... - gi\|208813654\|ref\|ZP_03254983.1\| Int protein [Escherichia coli O157:H7 str. EC4045], gi\|208734931\|gb\|... gi\|15802676, gi\|... - gi\|15802676\|ref\|NP_288703.1\| putative integrase for prophage CP-933V [Escherichia coli O157:H7 EDL93... gi\|208726838, gi... - gi\|208807037\|ref\|ZP_03249374.1\| Int protein [Escherichia coli O157:H7 str. EC4206], gi\|208726838\|gb\|... gi\|217327317, gi... - gi\|217327317\|ref\|ZP_03443400.1\| Int protein [Escherichia coli O157:H7 str. TW14588], gi\|217319684\|gb...	219.0	[0..7]	[395..38]
gi\|30910915, gi\|... - gi\|49523586\|emb\|CAD88804.1\| putative integrase [Phage BP-4795], gi\|31044226\|ref\|NP_851940.1\| putativ...	217.0	[0..7]	[395..38]
gi\|77635439 - gi\|77635439\|ref\|ZP_00797524.1\| COG0582: Integrase [Yersinia pestis Angola] gi\|89103031 - gi\|89103031\|ref\|ZP_01175628.1\| COG0582: Integrase [Yersinia pestis biovar Orientalis str. IP275]	214.0	[0..13]	[392..2]
gi\|165939324, gi... - gi\|165939324\|ref\|ZP_02227872.1\| Int protein [Yersinia pestis biovar Orientalis str. IP275], gi\|16591... gi\|165928348, gi... - gi\|165928348\|ref\|ZP_02224180.1\| Int protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|16... gi\|162353709, gi... - gi\|162420894\|ref\|YP_001606816.1\| phage integrase family site specific recombinase [Yersinia pestis A... gi\|229902011, gi... - gi\|229902011\|ref\|ZP_04517132.1\| putative transposase [Yersinia pestis Nepal516], gi\|229680907\|gb\|EEO... gi\|108779375, gi... - gi\|108807462\|ref\|YP_651378.1\| hypothetical protein YPA_1466 [Yersinia pestis Antiqua], gi\|108779375\|... gi\|145210031, gi... - gi\|145598335\|ref\|YP_001162411.1\| hypothetical protein YPDSF_1038 [Yersinia pestis Pestoides F], gi\|1... gi\|229688865, gi... - gi\|229898149\|ref\|ZP_04513298.1\| putative transposase [Yersinia pestis biovar Orientalis str. India 1... gi\|229897505, gi... - gi\|229897505\|ref\|ZP_04512661.1\| putative transposase [Yersinia pestis biovar Orientalis str. PEXU2],... gi\|229894800, gi... - gi\|229894800\|ref\|ZP_04509980.1\| putative transposase [Yersinia pestis Pestoides A], gi\|229702273\|gb\|... gi\|167468176 - gi\|167468176\|ref\|ZP_02332880.1\| site-specific recombinase, phage integrase family protein [Yersinia ... gi\|21959071, gi\|... - gi\|22126113\|ref\|NP_669536.1\| transposase [Yersinia pestis KIM], gi\|21959071\|gb\|AAM85787.1\|AE013825_1... gi\|167424753, gi... - gi\|167424753\|ref\|ZP_02316506.1\| Int protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|1... gi\|166961981, gi... - gi\|167420286\|ref\|ZP_02312039.1\| Int protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|1... gi\|166208117, gi... - gi\|166210937\|ref\|ZP_02236972.1\| Int protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|1662... gi\|165991840, gi... - gi\|166009285\|ref\|ZP_02230183.1\| Int protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|16599...	213.0	[0..7]	[392..21]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITDVWKYRG KSTGELRSSV CYAIKTGVFD YAKQFPSSRN LEKFGEARQD LTIKELAEKF  60
   61 LALKETEVAK TSLNTYRAVI KNILSIIGEK NLASSINKEK LLEVRKELLT GYQIPKSNYI 120
  121 VTQPGRSAVT VNNYMTNLNA VFQFGVDNGY LADNPFKGIS PLKESRTIPD PLSREEFIRL 180
  181 IDACRNQQAK NLWCVSVYTG VRPGELCALG WEDIDLKNGT MMIRRNLAKD RFTVPKTQAG 240
  241 TNRVIHLIKP AIDALRSQMT LTRLSKEHII DVHFREYGRT EKQKCTFVFQ PEVSARVKNY 300
  301 GDHFTVDSIR QMWDAAIKRA GLRHRKSYQS RHTYACWSLT AGANPAFIAN QMGHADAQMV 360
  361 FQVYGKWMSE NNNAQVALLN TQLSEFAPTM PHNEAMKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.09691
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.32470898553998	bayes_pls_golite062009
site-specific recombinase activity	0.63725674285826	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: