YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1787838, gi\|4...
Organism:	Escherichia coli K-12
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1787838, gi|4....

Description	E-value	Query Range	Subject Range
gi\|83569537 - gi\|83569537\|ref\|ZP_00920989.1\| hypothetical protein Sdys1_01002193 [Shigella dysenteriae 1012]	144.0	[0..23]	[96..8]
gi\|56682768 - gi\|56682768\|gb\|AAW21763.1\| S [Stx1-converting phage phi-O153] gi\|254592217, gi... - gi\|254792817\|ref\|YP_003077654.1\| lysis protein [Escherichia coli O157:H7 str. TW14359], gi\|254592217...	139.0	[0..26]	[96..26]
gi\|9633440, gi\|5... - gi\|9633440\|ref\|NP_050543.1\| lysis protein [Enterobacteria phage VT2-Sakai], gi\|5881636\|dbj\|BAA84327.... gi\|32170987, gi\|... - gi\|32170987\|ref\|NP_859232.1\| lysis protein [Stx1 converting phage], gi\|32128165\|dbj\|BAC77969.1\| lysi...	139.0	[0..26]	[96..26]
gi\|115512737, gi... - gi\|117623613\|ref\|YP_852526.1\| phage lysis protein [Escherichia coli APEC O1], gi\|115512737\|gb\|ABJ008...	139.0	[0..26]	[96..30]
gi\|15802642, gi\|... - gi\|15802642\|ref\|NP_288669.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157:H7 ... gi\|25371799 - pir\|\|D85845 probable lysis protein S of prophage CP-933V Z3340 [imported] - Escherichia coli (strain... gi\|254593381, gi... - gi\|254793981\|ref\|YP_003078818.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157...	138.0	[0..26]	[96..20]
gi\|26107703, gi\|... - gi\|26247302\|ref\|NP_753342.1\| lambdoid prophage DLP12 lysis protein S [Escherichia coli CFT073], gi\|2...	137.0	[0..26]	[96..36]
gi\|91072084, gi\|... - gi\|91210510\|ref\|YP_540496.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli ... gi\|117623489, gi... - gi\|117623489\|ref\|YP_852402.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli... gi\|218558209, gi... - gi\|218558209\|ref\|YP_002391122.1\| Lysis protein S homolog from lambdoid prophage [Escherichia coli S8... gi\|226900007, gi... - gi\|237705250\|ref\|ZP_04535731.1\| lambdoid prophage DLP12 lysis protein S [Escherichia sp. 3_2_53FAA],...	136.0	[0..26]	[96..36]
gi\|209911878, gi... - gi\|209918619\|ref\|YP_002292703.1\| putative phage lysis protein [Escherichia coli SE11], gi\|209911878\|... gi\|83587745, gi\|... - gi\|83587745\|ref\|ZP_00926371.1\| hypothetical protein Ecol1_01000770 [Escherichia coli 101-1], gi\|1944...	134.0	[0..26]	[96..1]
VLYS_BPP21 - Lysis protein S OS=Enterobacteria phage P21 GN=S PE=4 SV=1 gi\|93694, gi\|215467 - gi\|93694\|pir\|\|S22905 lysis protein S - phage 21, gi\|215467\|gb\|AAA32349.1\| S [Phage 21]	134.0	[0..26]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKLPRRLR SFQTYCTIRV HRGEDMKSMD KLTTGVAYGT SAGNAGFWAL QLLDKVTPSQ  60
   61 WAAIGVLGSL VFGLLTYLTN LYFKIKEDRR KAARGE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.148742
Match:	PF04971.3
Description:	No description for PF04971.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits