YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16129510, gi\|...
Organism:	Escherichia coli K-12
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16129510, gi|....

Description	E-value	Query Range	Subject Range
gi\|218368345, gi... - gi\|218561576\|ref\|YP_002394489.1\| hypothetical protein ECS88_5023 [Escherichia coli S88], gi\|21836834... gi\|117626708, gi... - gi\|117626708\|ref\|YP_860031.1\| hypothetical protein APECO1_2031 [Escherichia coli APEC O1], gi\|115515...	113.0	[0..1]	[63..27]
YNFN_ECOLI - Hypothetical protein ynfN - Escherichia coli gi\|238900771, gi... - gi\|238900771\|ref\|YP_002926567.1\| Qin prophage; hypothetical protein [Escherichia coli BW2952], gi\|23... EG14388 - Qin prophage; cold shock-induced protein / Cold shock-induced protein, function unknown, Qin prophag... gi\|170081219, gi... - gi\|170081219\|ref\|YP_001730539.1\| Qin prophage; protein [Escherichia coli str. K-12 substr. DH10B], g... EG14388 - Qin prophage; cold shock-induced protein / Cold shock-induced protein, function unknown, Qin prophag... gi\|85675019, gi\|... - gi\|89108393\|ref\|AP_002173.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856...	93.0	[0..13]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVPAMTGVN TIMREYPNGE KTHLTVMAAG FPSLTGDHKV IYVAADRHVT SEEILEAAIR  60
   61 LLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.412	d.300.1	Description not found.
View	Download	0.390	a.4.1	Homeodomain-like
View	Download	0.376	g.28.1	Thyroglobulin type-1 domain
View	Download	0.365	a.64.1	Saposin
View	Download	0.346	g.27.1	Fibronectin type I module
View	Download	0.249	c.44.2	Enzyme IIB-cellobiose

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits