YRC Public Data Repository - Protein Structure Prediction

Protein:	OSMC_ECOLI
Organism:	Escherichia coli
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSMC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|94312550, gi\|... - gi\|94312550\|ref\|YP_585759.1\| OsmC-like protein [Ralstonia metallidurans CH34], gi\|93356402\|gb\|ABF104...	142.0	[0..2]	[142..5]
gi\|72122718, gi\|... - gi\|73539381\|ref\|YP_299748.1\| OsmC-like protein [Ralstonia eutropha JMP134], gi\|72122718\|gb\|AAZ64904....	142.0	[0..2]	[142..5]
gi\|115376751, gi... - gi\|115376751\|ref\|ZP_01463977.1\| organic hydroperoxide resistance protein [Stigmatella aurantiaca DW4...	142.0	[0..2]	[143..30]
gi\|54017880, gi\|... - gi\|54026372\|ref\|YP_120614.1\| putative organic hydroperoxide resistance protein [Nocardia farcinica I...	141.0	[0..1]	[141..1]
gi\|92439530, gi\|... - gi\|92916323\|ref\|ZP_01284943.1\| OsmC-like protein [Mycobacterium sp. KMS], gi\|92439530\|gb\|EAS97377.1\|... gi\|108768567, gi... - gi\|108798148\|ref\|YP_638345.1\| OsmC-like protein [Mycobacterium sp. MCS], gi\|108768567\|gb\|ABG07289.1\|... gi\|126233607, gi... - gi\|126433807\|ref\|YP_001069498.1\| OsmC family protein [Mycobacterium sp. JLS], gi\|126233607\|gb\|ABN970...	141.0	[0..1]	[141..1]
gi\|49611673, gi\|... - gi\|50121147\|ref\|YP_050314.1\| osmotically inducible protein C [Pectobacterium atrosepticum SCRI1043],...	140.0	[0..1]	[141..1]
gi\|92911486, gi\|... - gi\|92911486\|ref\|ZP_01280258.1\| OsmC-like protein [Mycobacterium sp. JLS], gi\|92430998\|gb\|EAS90337.1\|...	140.0	[0..1]	[141..39]
gi\|113528611, gi... - gi\|116694112\|ref\|YP_728323.1\| organic hydroperoxide resistance protein [Ralstonia eutropha H16], gi\|...	139.0	[0..2]	[142..5]
gi\|58040420, gi\|... - gi\|58040420\|ref\|YP_192384.1\| osmotically inducible protein C [Gluconobacter oxydans 621H], gi\|580028...	139.0	[0..1]	[142..1]
gi\|56180660, gi\|... - gi\|56461650\|ref\|YP_156931.1\| organic hydroperoxide reductase [Idiomarina loihiensis L2TR], gi\|561806...	139.0	[0..3]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIHKKGQAH WEGDIKRGKG TVSTESGVLN QQPYGFNTRF EGEKGTNPEE LIGAAHAACF  60
   61 SMALSLMLGE AGFTPTSIDT TADVSLDKVD AGFAITKIAL KSEVAVPGID ASTFDGIIQK 120
  121 AKAGCPVSQV LKAEITLDYQ LKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1nyeA
Description:	Crystal structure of OsmC from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peroxidase activity	0.32241915869375	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	0.32241915869375	bayes_pls_golite062009
antioxidant activity	0.20848728079754	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: