YRC Public Data Repository - Protein Structure Prediction

Protein:	EG11825
Organism:	Escherichia coli K-12
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EG11825.

Description	E-value	Query Range	Subject Range
gi\|75257732, gi\|... - gi\|75257732\|ref\|ZP_00729217.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli E22...	241.0	[0..1]	[297..1]
gi\|75212837, gi\|... - gi\|75212837\|ref\|ZP_00712835.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli B17... gi\|75190508, gi\|... - gi\|75190508\|ref\|ZP_00703775.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli E24...	241.0	[0..1]	[297..1]
DAPF_PHOPR - Diaminopimelate epimerase OS=Photobacterium profundum GN=dapF PE=1 SV=1 DAPF_PHOPR - Diaminopimelate epimerase OS=Photobacterium profundum (strain SS9) GN=dapF PE=1 SV=1	241.0	[0..1]	[295..1]
gi\|49258601, gi\|... - gi\|49258602\|pdb\|1QYA\|B Chain B, Crystal Structure Of E. Coli Protein Ydde, gi\|49258601\|pdb\|1QYA\|A Ch...	239.0	[0..2]	[297..12]
gi\|82776918, gi\|... - gi\|82776918\|ref\|YP_403267.1\| hypothetical protein SDY_1654 [Shigella dysenteriae Sd197], gi\|81241066...	239.0	[0..1]	[297..1]
gi\|188493204, gi... - gi\|75512582\|ref\|ZP_00735105.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli 536...	239.0	[0..1]	[297..1]
gi\|75231782, gi\|... - gi\|75231782\|ref\|ZP_00718123.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Escherichia coli B7A...	239.0	[0..1]	[297..1]
DAPF_SHELP - Diaminopimelate epimerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dapF PE=1 SV=1	239.0	[0..11]	[293..4]
gi\|90414246, gi\|... - gi\|90414246\|ref\|ZP_01222226.1\| diaminopimelate epimerase [Photobacterium profundum 3TCK], gi\|9032469...	239.0	[0..1]	[295..1]
YY46_CLOAB, Y344... - (P58293) Hypothetical protein CAC3446, Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutyli... Y3446_CLOAB - Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 14...	238.0	[0..2]	[295..4]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPQVYHVDA FTSQPFRGNS AGVVFPADNL SEAQMQLIAR ELGHSETAFL LHSDDSDVRI  60
   61 RYFTPTVEVP ICGHATVAAH YVRAKVLGLG NCTIWQTSLA GKHRVTIEKH NDDYRISLEQ 120
  121 GTPGFEPPLE GETRAAIINA LHLTEDDILP GLPIQVATTG HSKVMIPLKP EVDIDALSPD 180
  181 LNALTAISKK IGCNGFFPFQ IRPGKNETDG RMFSPAIGIV EDPVTGNANG PMGAWLVHHN 240
  241 VLPHDGNVLR VKGHQGRALG RDGMIEVTVT IRDNQPEKVT ISGTAVILFH AEWAIEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.045757
Match:	1sdjA
Description:	X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00848565859536	bayes_pls_golite062009
amino-acid racemase activity	0.0628393252100677	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: