YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49176091, gi\|...
Organism:	Escherichia coli K-12
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49176091, gi|....

Description	E-value	Query Range	Subject Range
gi\|25305194, gi\|... - gi\|25305194\|pir\|\|D90847 hypothetical protein ECs1748 [imported] - Escherichia coli (strain O157:H7,... gi\|26107979, gi\|... - gi\|26247577\|ref\|NP_753617.1\| hypothetical protein c1712 [Escherichia coli CFT073], gi\|26107979\|gb\|AA... gi\|13361213 - gi\|13361213\|dbj\|BAB35171.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13361213 - gi\|13361213\|dbj\|BAB35171.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|82776595, gi\|... - gi\|82776595\|ref\|YP_402944.1\| hypothetical protein SDY_1306 [Shigella dysenteriae Sd197], gi\|81240743...	236.0	[0..1]	[135..1]
gi\|74312416, gi\|... - gi\|74312416\|ref\|YP_310835.1\| hypothetical protein SSON_1932 [Shigella sonnei Ss046], gi\|73855893\|gb\|...	235.0	[0..1]	[135..1]
gi\|30062769, gi\|... - gi\|30062769\|ref\|NP_836940.1\| hypothetical protein S1335 [Shigella flexneri 2a str. 2457T], gi\|300410...	235.0	[0..1]	[135..1]
gi\|91210471, gi\|... - gi\|91210471\|ref\|YP_540457.1\| dsDNA-mimic protein [Escherichia coli UTI89], gi\|91072045\|gb\|ABE06926.1... gi\|117623463, gi... - gi\|117623463\|ref\|YP_852376.1\| dsDNA-mimic protein [Escherichia coli APEC O1], gi\|115512587\|gb\|ABJ006... gi\|237705212, gi... - gi\|237705212\|ref\|ZP_04535693.1\| dsDNA-mimic protein [Escherichia sp. 3_2_53FAA], gi\|226899969\|gb\|EEH...	234.0	[0..1]	[135..1]
gi\|81245710, gi\|... - gi\|82544299\|ref\|YP_408246.1\| hypothetical protein SBO_1819 [Shigella boydii Sb227], gi\|81245710\|gb\|A...	234.0	[0..1]	[135..1]
gi\|110805250, gi... - gi\|110805250\|ref\|YP_688770.1\| dsDNA-mimic protein [Shigella flexneri 5 str. 8401], gi\|110614798\|gb\|A...	233.0	[0..1]	[135..1]
gi\|56383415, gi\|... - gi\|56479864\|ref\|NP_707155.2\| hypothetical protein SF1249 [Shigella flexneri 2a str. 301], gi\|5638341...	233.0	[0..1]	[135..1]
gi\|15801474, gi\|... - gi\|15801474\|ref\|NP_287491.1\| hypothetical protein Z2024 [Escherichia coli O157:H7 EDL933], gi\|125149... gi\|25305196 - gi\|25305196\|pir\|\|C85705 hypothetical protein Z2024 [imported] - Escherichia coli (strain O157:H7, s...	184.0	[0..25]	[135..1]
gi\|22125924, gi\|... - gi\|22125924\|ref\|NP_669347.1\| hypothetical protein y2032 [Yersinia pestis KIM], gi\|21958863\|gb\|AAM855... gi\|45436648, gi\|... - gi\|45441786\|ref\|NP_993325.1\| hypothetical protein YP_1985 [Yersinia pestis biovar Microtus str. 9100...	180.0	[0..29]	[135..18]
gi\|161950126 - gi\|161950126\|ref\|YP_402944.2\| dsDNA-mimic protein [Shigella dysenteriae Sd197] gi\|254288135, gi... - gi\|254288135\|ref\|YP_003053883.1\| dsDNA-mimic protein [Escherichia coli BL21(DE3)], gi\|253977442\|gb\|A... YCIU_ECOL6 - UPF0263 protein YciU OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yciU PE=3 SV=... gi\|254161327, gi... - gi\|254161327\|ref\|YP_003044435.1\| dsDNA-mimic protein [Escherichia coli B str. REL606], gi\|253973228\|... gi\|168758172, gi... - gi\|189354971\|gb\|EDU73390.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254592118, gi... - gi\|254792718\|ref\|YP_003077555.1\| putative double-stranded DNA mimic [Escherichia coli O157:H7 str. T... gi\|168750808, gi... - gi\|188015090\|gb\|EDU53212.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189359584, gi... - gi\|189359584\|gb\|EDU78003.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168765040, gi... - gi\|189365081\|gb\|EDU83497.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168784158, gi... - gi\|188998618\|gb\|EDU67604.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187767786, gi... - gi\|187767786\|gb\|EDU31630.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... EG14256 - UPF0263 family protein / Function unknown, UPF0263 family gi\|161367613 - gi\|161367613\|ref\|NP_287491.2\| dsDNA-mimic protein [Escherichia coli O157:H7 EDL933] YCIU_ECOSE - UPF0263 protein YciU OS=Escherichia coli (strain SE11) GN=yciU PE=3 SV=1 YCIU_ECO5E - UPF0263 protein YciU OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yciU PE=3 SV=1 gi\|217328048, gi... - gi\|217328048\|ref\|ZP_03444130.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YCIU_ECO27 - UPF0263 protein YciU OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yciU PE=3 SV=1 YCIU_ECO81 - UPF0263 protein YciU OS=Escherichia coli O81 (strain ED1a) GN=yciU PE=3 SV=1 YCIU_ECO8A - UPF0263 protein YciU OS=Escherichia coli O8 (strain IAI1) GN=yciU PE=3 SV=1 YCIU_ECO7I - UPF0263 protein YciU OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yciU PE=3 SV=1 YCIU_ECO55 - UPF0263 protein YciU OS=Escherichia coli (strain 55989 / EAEC) GN=yciU PE=3 SV=1 gi\|168801560, gi... - gi\|189376333\|gb\|EDU94749.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189372499, gi... - gi\|189372499\|gb\|EDU90915.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... YCIU_ECOSM - UPF0263 protein YciU OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yciU PE=3 SV=1 YCIU_ECODH - UPF0263 protein YciU OS=Escherichia coli (strain K12 / DH10B) GN=yciU PE=3 SV=1 gi\|208727214, gi... - gi\|208807413\|ref\|ZP_03249750.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195939134 - gi\|195939134\|ref\|ZP_03084516.1\| dsDNA-mimic protein [Escherichia coli O157:H7 str. EC4024] gi\|208738044, gi... - gi\|208822559\|ref\|ZP_03262878.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208816365, gi... - gi\|208816365\|ref\|ZP_03257544.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|89108094, gi\|... - gi\|89108094\|ref\|AP_001874.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... YCIU_ECOLI - UPF0263 protein yciU - Escherichia coli gi\|38703951 - gi\|38703951\|ref\|NP_309775.2\| dsDNA-mimic protein [Escherichia coli O157:H7 str. Sakai] YCIU_ECOL5 - UPF0263 protein YciU OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yciU PE=3 SV=1 gi\|124500603, gi... - gi\|124528371\|ref\|ZP_01699681.1\| protein of unknown function DUF440 [Escherichia coli B], gi\|12450060... EG14256 - UPF0263 family protein / Function unknown, UPF0263 family YCIU_ECOLC - UPF0263 protein YciU OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yciU PE=3 SV=1 gi\|227836527, gi... - gi\|227886323\|ref\|ZP_04004128.1\| dsDNA-mimic protein [Escherichia coli 83972], gi\|227836527\|gb\|EEJ469... YCIU_ECOBW - UPF0263 protein YciU OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yciU PE=3 SV=1 gi\|242377025, gi... - gi\|251784752\|ref\|YP_002999056.1\| hypothetical protein B21_01232 [Escherichia coli BL21], gi\|24237702... YCIU_ECOL6 - UPF0263 protein yciU OS=Escherichia coli O6 GN=yciU PE=3 SV=1 gi\|195182827 - gi\|195182827\|dbj\|BAG66399.1\| conserved predicted protein [Escherichia coli O111:H-] YCIU_ECOLU - UPF0263 protein YciU OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yciU PE=3 SV=1 gi\|193069964, gi... - gi\|75235244\|ref\|ZP_00719481.1\| COG3099: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191171086, gi... - gi\|75242048\|ref\|ZP_00725842.1\| COG3099: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192927501, gi... - gi\|75257151\|ref\|ZP_00728687.1\| COG3099: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|188494198, gi... - gi\|75515139\|ref\|ZP_00737343.1\| COG3099: Uncharacterized protein conserved in bacteria [Escherichia c... sp\|B7UQD8\|YCIU_ECO27 - UPF0263 protein yciU OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yciU PE=3 SV=1 gi\|194437134, gi... - gi\|83587386\|ref\|ZP_00926014.1\| COG3099: Uncharacterized protein conserved in bacteria [Escherichia c... YCIU_SHIB3 - UPF0263 protein YciU OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yciU PE=3 SV=1 YCIU_ECO24 - UPF0263 protein YciU OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yciU PE=3 SV=1 YCIU_ECOHS - UPF0263 protein YciU OS=Escherichia coli O9:H4 (strain HS) GN=yciU PE=3 SV=1 YCIU_ECO57 - UPF0263 protein YciU OS=Escherichia coli O157:H7 GN=yciU PE=3 SV=1 gi\|194426069, gi... - gi\|75212679\|ref\|ZP_00712677.1\| COG3099: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|190903289, gi... - gi\|75230194\|ref\|ZP_00716695.1\| COG3099: Uncharacterized protein conserved in bacteria [Escherichia c...	180.0	[0..27]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSDCFTSS VRCCKTSPTE VKQVVTMDMD LNNRLTEDET LEQAYDIFLE LAADNLDPAD  60
   61 VLLFNLQFEE RGGAELFDPA EDWQEHVDFD LNPDFFAEVV IGLADSEDGE INDVFARILL 120
  121 CREKDHKLCH IIWRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1nnvA
Description:	The Solution structure of HI1450
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits