YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4062221, gi\|1...
Organism:	Escherichia coli K-12
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4062221, gi|1....

Description	E-value	Query Range	Subject Range
gi\|30040306, gi\|... - gi\|30062062\|ref\|NP_836233.1\| thiol:disulfide interchange protein [Shigella flexneri 2a str. 2457T], ... gi\|24050762, gi\|... - gi\|24111952\|ref\|NP_706462.1\| thiol:disulfide interchange protein [Shigella flexneri 2a str. 301], gi... gi\|110804600, gi... - gi\|110804600\|ref\|YP_688120.1\| disulfide isomerase/thiol-disulfide oxidase [Shigella flexneri 5 str. ...	199.0	[0..1]	[268..1]
gi\|117622826, gi... - gi\|117622826\|ref\|YP_851739.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli APEC O1]... gi\|26106983, gi\|... - gi\|26246584\|ref\|NP_752623.1\| Thiol:disulfide interchange protein dsbG precursor [Escherichia coli CF... gi\|91209652, gi\|... - gi\|91209652\|ref\|YP_539638.1\| thiol:disulfide interchange protein DsbG precursor [Escherichia coli UT... gi\|237707421, gi... - gi\|237707421\|ref\|ZP_04537902.1\| thiol:disulfide interchange protein dsbG [Escherichia sp. 3_2_53FAA]... gi\|227838500, gi... - gi\|227884414\|ref\|ZP_04002219.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli 83972]...	196.0	[0..1]	[268..1]
gi\|13360101 - gi\|13360101\|dbj\|BAB34066.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7 str. Sakai... gi\|13360101 - gi\|13360101\|dbj\|BAB34066.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7] gi\|209777412, gi... - gi\|25500107\|pir\|\|G85559 thiol,disulfide interchange protein [imported] - Escherichia coli (strain O1... gi\|15800319, gi\|... - gi\|15800319\|ref\|NP_286331.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7 EDL933], ...	196.0	[0..1]	[268..1]
gi\|208823044, gi... - gi\|208823044\|ref\|ZP_03263362.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|189358031, gi... - gi\|189402026\|ref\|ZP_02779709.2\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|188024639, gi... - gi\|188024639\|ref\|ZP_02772750.2\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|38703881 - gi\|38703881\|ref\|NP_308670.2\| thiol:disulfide interchange protein [Escherichia coli O157:H7] gi\|38703881 - gi\|38703881\|ref\|NP_308670.2\| thiol:disulfide interchange protein [Escherichia coli O157:H7 str. Saka...	192.0	[0..3]	[268..1]
gi\|62126841, gi\|... - gi\|62179208\|ref\|YP_215625.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica subsp....	182.0	[0..21]	[267..1]
gi\|197094656, gi... - gi\|197363179\|ref\|YP_002142816.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica su... gi\|238911558 - gi\|238911558\|ref\|ZP_04655395.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica sub... gi\|207856073, gi... - gi\|207856073\|ref\|YP_002242724.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=dsbG] [protein=disulfide isomerase/thiol-disulfide oxidase] [protein_id=YP_005236314.1] [locat... gi\|195631835, gi... - gi\|195631835\|gb\|EDX50355.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp. ent... gi\|16419118, gi\|... - gi\|16763984\|ref\|NP_459599.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella typhimurium LT2... gi\|197265493, gi... - gi\|197265493\|ref\|ZP_03165567.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp.... gi\|167550864, gi... - gi\|205324170\|gb\|EDZ12009.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp. ent... gi\|168260884, gi... - gi\|205349816\|gb\|EDZ36447.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp. ent... gi\|56414256, gi\|... - gi\|56414256\|ref\|YP_151331.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica subsp....	181.0	[0..21]	[267..1]
gi\|110342428, gi... - gi\|110640836\|ref\|YP_668564.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli 536], gi...	180.0	[0..36]	[268..16]
gi\|254591172, gi... - gi\|254791772\|ref\|YP_003076609.1\| periplasmic disulfide isomerase/thiol-disulphide oxidase [Escherich... gi\|217321536, gi... - gi\|217325315\|ref\|ZP_03441399.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|209160669, gi... - gi\|209399269\|ref\|YP_002269239.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 ... gi\|208816178, gi... - gi\|208816178\|ref\|ZP_03257357.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|208808801, gi... - gi\|208808801\|ref\|ZP_03251138.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|218698979, gi... - gi\|218698979\|ref\|YP_002406608.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli IAI39... gi\|168774664, gi... - gi\|187769699\|gb\|EDU33543.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|168770205, gi... - gi\|189360854\|gb\|EDU79273.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189369165, gi... - gi\|189369165\|gb\|EDU87581.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|162139707 - gi\|162139707\|ref\|NP_308670.3\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H7 ... gi\|195936153 - gi\|195936153\|ref\|ZP_03081535.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H... gi\|189379398, gi... - gi\|189379398\|gb\|EDU97814.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189373694, gi... - gi\|189373694\|gb\|EDU92110.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189002875, gi... - gi\|189002875\|gb\|EDU71861.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|161367635 - gi\|161367635\|ref\|NP_286331.2\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H7 ... DSBG_ECO57 - Thiol:disulfide interchange protein DsbG OS=Escherichia coli O157:H7 GN=dsbG PE=3 SV=1	180.0	[0..36]	[268..16]
gi\|29142661, gi\|... - gi\|29142661\|ref\|NP_806003.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica subsp.... gi\|213865207 - gi\|213865207\|ref\|ZP_03387326.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica sub... gi\|16759566 - gi\|16759566\|ref\|NP_455183.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica subsp.... gi\|213999491 - gi\|213999491\|ref\|ZP_03410226.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica sub... gi\|25513303, gi\|... - gi\|25513303\|pir\|\|AI0576 thiol,disulfide interchange protein DsbG precursor [imported] - Salmonella e... gi\|213163850 - gi\|213163850\|ref\|ZP_03349560.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica sub... gi\|213585652 - gi\|213585652\|ref\|ZP_03367478.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica sub... gi\|213619226 - gi\|213619226\|ref\|ZP_03373052.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica sub...	179.0	[0..21]	[267..1]
gi\|75258658, gi\|... - gi\|75258658\|ref\|ZP_00730065.1\| COG1651: Protein-disulfide isomerase [Escherichia coli E22], gi\|19306... gi\|75229510, gi\|... - gi\|75229510\|ref\|ZP_00716057.1\| COG1651: Protein-disulfide isomerase [Escherichia coli B7A], gi\|19116... gi\|75210767, gi\|... - gi\|75210767\|ref\|ZP_00710899.1\| COG1651: Protein-disulfide isomerase [Escherichia coli B171], gi\|1944...	179.0	[0..36]	[268..16]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIGYAFYS TFALTEKDKL MLKKILLLAL LPAIAFAEEL PAPVKAIEKQ GITIIKTFDA  60
   61 PGGMKGYLGK YQDMGVTIYL TPDGKHAISG YMYNEKGENL SNTLIEKEIY APAGREMWQR 120
  121 MEQSHWLLDG KKDAPVIVYV FADPFCPYCK QFWQQARPWV DSGKVQLRTL LVGVIKPESP 180
  181 ATAAAILASK DPAKTWQQYE ASGGKLKLNV PANVSTEQMK VLSDNEKLMD DLGANVTPAI 240
  241 YYMSKENTLQ QAVGLPDQKT LNIIMGNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1v57A
Description:	Crystal Structure of the Disulfide Bond Isomerase DsbG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: