YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16128544, gi\|...
Organism:	Escherichia coli K-12
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16128544, gi|....

Description	E-value	Query Range	Subject Range
gi\|90111150, gi\|... - gi\|90111150\|ref\|NP_415093.2\| DLP12 prophage; predicted tail fiber assembly protein (pseudogene) [Esc...	232.0	[0..61]	[247..1]
TFA_LAMBD - Tail fiber assembly protein OS=Enterobacteria phage lambda GN=tfa PE=1 SV=1	185.0	[0..90]	[247..37]
gi\|168762597, gi... - gi\|189367191\|gb\|EDU85607.1\| tail fiber assembly protein [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|217328533, gi... - gi\|217328533\|ref\|ZP_03444615.1\| tail fiber assembly protein [Escherichia coli O157:H7 str. TW14588],... gi\|25301994, gi\|... - pir\|\|E85693 probable tail fiber protein of prophage CP-933X Z1920 [imported] - Escherichia coli (str... gi\|13361115, gi\|... - gi\|15830905\|ref\|NP_309678.1\| tail fiber assembly protein [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|12514849, gi\|... - gi\|15801380\|ref\|NP_287397.1\| putative tail fiber protein of prophage CP-933X [Escherichia coli O157:... gi\|13361115, gi\|... - gi\|15830905\|ref\|NP_309678.1\| tail fiber assembly protein [Escherichia coli O157:H7], gi\|13361115\|dbj...	185.0	[0..90]	[246..37]
gi\|75190209 - gi\|75190209\|ref\|ZP_00703476.1\| hypothetical protein EcolE_01003503 [Escherichia coli E24377A]	184.0	[0..90]	[247..33]
gi\|117623516, gi... - gi\|117623516\|ref\|YP_852429.1\| phage-related tail fiber assembly protein G [Escherichia coli APEC O1]... gi\|237705275, gi... - gi\|237705275\|ref\|ZP_04535756.1\| tail fiber assembly protein [Escherichia sp. 3_2_53FAA], gi\|22690003... gi\|218365007, gi... - gi\|218558238\|ref\|YP_002391151.1\| putative tail fibre chaperone; Qin prophage [Escherichia coli S88],... gi\|91072118, gi\|... - gi\|91210544\|ref\|YP_540530.1\| phage-related tail fiber assembly protein G [Escherichia coli UTI89], g... gi\|187427215, gi... - gi\|75179099\|ref\|ZP_00699117.1\| hypothetical protein SboyB_01000894 [Shigella boydii BS512], gi\|18773...	183.0	[0..90]	[247..37]
gi\|36785369, gi\|... - gi\|37525940\|ref\|NP_929284.1\| hypothetical protein plu2023 [Photorhabdus luminescens subsp. laumondii...	182.0	[0..78]	[245..327]
gi\|75196635 - gi\|75196635\|ref\|ZP_00706705.1\| COG0052: Ribosomal protein S2 [Escherichia coli HS]	182.0	[0..90]	[245..33]
gi\|83569528, gi\|... - gi\|83569528\|ref\|ZP_00920980.1\| hypothetical protein Sdys1_01002184 [Shigella dysenteriae 1012], gi\|1...	182.0	[0..90]	[246..37]
gi\|190903054, gi... - gi\|75229914\|ref\|ZP_00716431.1\| COG0747: ABC-type dipeptide transport system, periplasmic component [...	181.0	[0..90]	[247..37]
gi\|193067605, gi... - gi\|75238940\|ref\|ZP_00722922.1\| COG0747: ABC-type dipeptide transport system, periplasmic component [...	180.0	[0..90]	[244..37]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISNSQVNR LRHFVRAGLR SLFRPEPQTA VEWADANYYL PKESAYQEGR WETLPFQRAI  60
   61 MNAMGSDYIR EVNVVKSARV GYSKMLLGVY AYFIEHKQRN TLI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGFVAVFNS DESSWHLVED HRGKTVYDVA SGDALFISEL GPLPENVTWL SPEGEFQKWN  60
   61 GTAWVKDAEA EKLFRIREAE ETKNSLMQVA SEHIAPLQDA VDLEIATEEE TSLLEAWKKY 120
  121 RVLLNRVDTS TAPDIEWPTN PVRE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.657577
Match:	PF02413.8
Description:	No description for PF02413.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits