YRC Public Data Repository - Protein Structure Prediction

Protein:	YLBH_ECOLI
Organism:	Escherichia coli
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLBH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|209400573, gi... - gi\|209400573\|ref\|YP_002269157.1\| RHS Repeat family protein [Escherichia coli O157:H7 str. EC4115], g... gi\|217325814, gi... - gi\|217325814\|ref\|ZP_03441898.1\| RHS Repeat family protein [Escherichia coli O157:H7 str. TW14588], g... gi\|254597685, gi... - gi\|254597699\|gb\|ACT76074.1\| RhsD [Escherichia coli], gi\|254597697\|gb\|ACT76073.1\| RhsD [Escherichia c... gi\|189373586, gi... - gi\|189373586\|gb\|EDU92002.1\| protein RhsA [Escherichia coli O157:H7 str. EC869], gi\|168786359\|ref\|ZP_... gi\|195936070 - gi\|195936070\|ref\|ZP_03081452.1\| RhsD [Escherichia coli O157:H7 str. EC4024] gi\|168754612, gi... - gi\|189357987\|gb\|EDU76406.1\| protein RhsA [Escherichia coli O157:H7 str. EC4401], gi\|168754612\|ref\|ZP... gi\|12513390, gi\|... - gi\|15800234\|ref\|NP_286246.1\| hypothetical protein Z0651 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|189369075, gi... - gi\|189369075\|gb\|EDU87491.1\| protein RhsA [Escherichia coli O157:H7 str. EC4501], gi\|168760337\|ref\|ZP...	284.0	[0..2]	[236..1164]
gi\|13360018, gi\|... - gi\|15829814\|ref\|NP_308587.1\| RhsD [Escherichia coli O157:H7], gi\|13360018\|dbj\|BAB33983.1\| RhsD core ... gi\|13360018, gi\|... - gi\|15829814\|ref\|NP_308587.1\| RhsD [Escherichia coli O157:H7 str. Sakai], gi\|13360018\|dbj\|BAB33983.1\|... gi\|25308806, gi\|... - gi\|254597681\|gb\|ACT76065.1\| RhsD [Escherichia coli], pir\|\|H90698 RhsD core protein with extension [i...	284.0	[0..2]	[236..1164]
gi\|75226894 - gi\|75226894\|ref\|ZP_00713786.1\| COG3209: Rhs family protein [Escherichia coli B7A]	185.0	[0..2]	[219..235]
gi\|75238935, gi\|... - gi\|75238935\|ref\|ZP_00722917.1\| COG3209: Rhs family protein [Escherichia coli E110019], gi\|193067731\|...	184.0	[0..2]	[219..264]
gi\|157158534, gi... - gi\|75189325\|ref\|ZP_00702592.1\| COG3209: Rhs family protein [Escherichia coli E24377A], gi\|157158534\|...	182.0	[0..2]	[219..1174]
gi\|75258778, gi\|... - gi\|75258778\|ref\|ZP_00730168.1\| COG3209: Rhs family protein [Escherichia coli E22], gi\|193063195\|ref\|... gi\|75211212, gi\|... - gi\|75211212\|ref\|ZP_00711319.1\| COG3209: Rhs family protein [Escherichia coli B171], gi\|194427594\|ref...	181.0	[0..2]	[219..1174]
gi\|1742368, gi\|8... - gi\|89108299\|ref\|AP_002079.1\| rhsE element core protein RshE [Escherichia coli str. K-12 substr. W311... RHSE_ECOLI - Protein rhsE - Escherichia coli gi\|1787728, gi\|1... - gi\|1787728\|gb\|AAC74538.1\| rhsE element core protein RshE [Escherichia coli K12], gi\|16129415\|ref\|NP_...	181.0	[0..2]	[219..441]
gi\|4377518 - gi\|4377518\|emb\|CAA43309.1\| RhsE protein [Escherichia coli]	181.0	[0..2]	[219..440]
gi\|194424460, gi... - gi\|83587798\|ref\|ZP_00926424.1\| COG3209: Rhs family protein [Escherichia coli 101-1], gi\|194436428\|re...	178.0	[0..2]	[219..686]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALMDADGN IAWSGEYDEW GNQLNEENPH HLHQPYRLPG QQYDKESGLY YNRNRYYDPL  60
   61 QGRYITQDPI GLEGGWSLYA YPLNPVNGID PLGLSPADVA LIRRKDQLNH QRAW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.270	N/A	N/A	b.1.1	Immunoglobulin

Predicted Domain #2

Region A:
Residues: [115-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DILSDTYEDM KRLNLGGTDQ FFHCMAFCRV SKLNDAGVSR SAKGLGYEKE IRDYGLNLFG  60
   61 MYGRKVKLSH SEMIEDNKKD LAVNDHGLTC PSTTDCSDRC SDYINPEHKK TIKALQDAGY 120
  121 LK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.269	N/A	N/A	a.174.1	Double Clp-N motif
View	Download	0.263	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.255	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.255	N/A	N/A	a.1.1	Globin-like
View	Download	0.255	N/A	N/A	a.73.1	Retrovirus capsid protein, N-terminal core domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits