YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49176027, gi\|...
Organism:	Escherichia coli K-12
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49176027, gi|....

Description	E-value	Query Range	Subject Range
gi\|13359993, gi\|... - gi\|15829790\|ref\|NP_308563.1\| hypothetical protein ECs0536 [Escherichia coli O157:H7], gi\|13359993\|db... gi\|189402022, gi... - gi\|189402022\|ref\|ZP_02779597.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|25298809, gi\|... - pir\|\|D85546 hypothetical protein ybaQ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189010060, gi... - gi\|189010060\|ref\|ZP_02803986.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|188017595, gi... - gi\|188024621\|ref\|ZP_02772861.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|12513356, gi\|... - gi\|15800212\|ref\|NP_286224.1\| hypothetical protein Z0602 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|187769730, gi... - gi\|187775986\|ref\|ZP_02799559.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|189405631, gi... - gi\|189405631\|ref\|ZP_02823056.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|13359993, gi\|... - gi\|15829790\|ref\|NP_308563.1\| hypothetical protein ECs0536 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189404840, gi... - gi\|189404840\|ref\|ZP_02811344.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|189369203, gi... - gi\|189403830\|ref\|ZP_02785367.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|189403104, gi... - gi\|189403104\|ref\|ZP_02793447.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|209400650, gi... - gi\|209400650\|ref\|YP_002269134.1\| addiction module antidote protein, HigA family [Escherichia coli O1... gi\|208822829, gi... - gi\|208822829\|ref\|ZP_03263147.1\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|208815672, gi... - gi\|208815672\|ref\|ZP_03256851.1\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|208729389, gi... - gi\|208809588\|ref\|ZP_03251925.1\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|217325694, gi... - gi\|217325694\|ref\|ZP_03441778.1\| addiction module antidote protein, HigA family [Escherichia coli O15...	118.0	[0..1]	[131..1]
gi\|157081360, gi... - gi\|157159330\|ref\|YP_001461672.1\| addiction module antidote protein [Escherichia coli E24377A], gi\|15... gi\|81244388, gi\|... - gi\|82542977\|ref\|YP_406924.1\| hypothetical protein SBO_0385 [Shigella boydii Sb227], gi\|81244388\|gb\|A... gi\|187730692, gi... - gi\|187730692\|ref\|YP_001879195.1\| addiction module antidote protein, HigA family [Shigella boydii CDC...	117.0	[0..1]	[131..1]
gi\|82775787, gi\|... - gi\|82775787\|ref\|YP_402134.1\| hypothetical protein SDY_0435 [Shigella dysenteriae Sd197], gi\|81239935...	113.0	[0..1]	[131..1]
gi\|73854541, gi\|... - gi\|74311064\|ref\|YP_309483.1\| hypothetical protein SSON_0472 [Shigella sonnei Ss046], gi\|73854541\|gb\|... gi\|209910958, gi... - gi\|209917699\|ref\|YP_002291783.1\| hypothetical protein ECSE_0508 [Escherichia coli SE11], gi\|20991095... gi\|194429002, gi... - gi\|194429002\|ref\|ZP_03061534.1\| addiction module antidote protein, HigA family [Escherichia coli B17... gi\|192959036, gi... - gi\|193067624\|ref\|ZP_03048591.1\| addiction module antidote protein, HigA family [Escherichia coli E11... gi\|192929160, gi... - gi\|193064131\|ref\|ZP_03045215.1\| addiction module antidote protein, HigA family [Escherichia coli E22... gi\|190902475, gi... - gi\|191167519\|ref\|ZP_03029332.1\| addiction module antidote protein, HigA family [Escherichia coli B7A...	112.0	[0..1]	[131..1]
gi\|30061983, gi\|... - gi\|30061983\|ref\|NP_836154.1\| hypothetical protein S0435 [Shigella flexneri 2a str. 2457T], gi\|300402... gi\|24050663, gi\|... - gi\|24111866\|ref\|NP_706376.1\| hypothetical protein SF0428 [Shigella flexneri 2a str. 301], gi\|2405066... gi\|110804508, gi... - gi\|110804508\|ref\|YP_688028.1\| hypothetical protein SFV_0456 [Shigella flexneri 5 str. 8401], gi\|1106...	112.0	[0..1]	[131..1]
EG13245 - putative DNA-binding transcriptional regulator / Predicted transcriptional regulator, function unkno... gi\|117622743, gi... - gi\|117622743\|ref\|YP_851656.1\| DNA-binding transcriptional regulator [Escherichia coli APEC O1], gi\|1... gi\|91209560, gi\|... - gi\|91209560\|ref\|YP_539546.1\| hypothetical protein UTI89_C0514 [Escherichia coli UTI89], gi\|91071134\|... gi\|110342339, gi... - gi\|110640747\|ref\|YP_668475.1\| putative HTH-type transcriptional regulator YbaQ [Escherichia coli 536... EG13245 - putative DNA-binding transcriptional regulator / Predicted transcriptional regulator, function unkno... gi\|170080068, gi... - gi\|170080068\|ref\|YP_001729388.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 s... YBAQ_ECOL6 - Uncharacterized HTH-type transcriptional regulator YbaQ OS=Escherichia coli O6:H1 (strain CFT073 / A... gi\|195936046 - gi\|195936046\|ref\|ZP_03081428.1\| hypothetical protein EscherichcoliO157_06201 [Escherichia coli O157:... gi\|254791666, gi... - gi\|254791666\|ref\|YP_003076503.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... YBAQ_ECOL6 - Uncharacterized HTH-type transcriptional regulator ybaQ OS=Escherichia coli O6 GN=ybaQ PE=3 SV=1 gi\|215485563, gi... - gi\|215485563\|ref\|YP_002327994.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... gi\|254287356, gi... - gi\|254287356\|ref\|YP_003053104.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|218364165, gi... - gi\|218557396\|ref\|YP_002390309.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... gi\|253972453, gi... - gi\|254160552\|ref\|YP_003043660.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|218425912, gi... - gi\|218688348\|ref\|YP_002396560.1\| putative DNA-binding transcriptional regulator [Escherichia coli ED... gi\|242376264, gi... - gi\|251783991\|ref\|YP_002998295.1\| hypothetical protein B21_00439 [Escherichia coli BL21], gi\|24237626... gi\|238899770, gi... - gi\|238899770\|ref\|YP_002925566.1\| putative DNA-binding transcriptional regulator [Escherichia coli BW... YBAQ_ECOLI - Putative HTH-type transcriptional regulator ybaQ - Escherichia coli gi\|237707516, gi... - gi\|237707516\|ref\|ZP_04537997.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227884503, gi... - gi\|227884503\|ref\|ZP_04002308.1\| addiction module antidote protein [Escherichia coli 83972], gi\|22783... gi\|85674622, gi\|... - gi\|89107352\|ref\|AP_001132.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|191173675, gi... - gi\|75238237\|ref\|ZP_00722238.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col...	100.0	[0..19]	[131..1]
gi\|83587062, gi\|... - gi\|83587062\|ref\|ZP_00925692.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col...	100.0	[0..19]	[131..1]
gi\|75189551 - gi\|75189551\|ref\|ZP_00702818.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col... gi\|75177570 - gi\|75177570\|ref\|ZP_00697651.1\| COG3093: Plasmid maintenance system antidote protein [Shigella boydii... gi\|194418957, gi... - gi\|83570183\|ref\|ZP_00921629.1\| COG3093: Plasmid maintenance system antidote protein [Shigella dysent...	99.0	[0..19]	[131..1]
gi\|75194703 - gi\|75194703\|ref\|ZP_00704773.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col...	99.0	[0..19]	[131..1]
gi\|75514606 - gi\|75514606\|ref\|ZP_00736861.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col...	98.0	[0..19]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQYVLASLF TRKQQLKTMK QATRKPTTPG DILLYEYLEP LDLKINELAE LLHVHRNSVS  60
   61 ALINNNRKLT TEMAFRLAKV FDTTVDFWLN LQAAVDLWEV ENNMRTQEEL GRIETVAEYL 120
  121 ARREERAKKV A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2ebyA
Description:	No description for 2ebyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits