YRC Public Data Repository - Protein Structure Prediction

Protein:	DXS_ECOLI
Organism:	Escherichia coli
Length:	620 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DXS_ECOLI.

Description	E-value	Query Range	Subject Range
DXS_ECOUT - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=dxs PE=3 SV=1 gi\|237707586, gi... - gi\|237707586\|ref\|ZP_04538067.1\| 1-deoxyxylulose-5-phosphate synthase [Escherichia sp. 3_2_53FAA], gi... DXS_SHIB3 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ... DXS_ECO45 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dxs PE=3 ... gi\|75209976, gi\|... - gi\|75209976\|ref\|ZP_00710165.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli B171], ... gi\|83585661, gi\|... - gi\|83585661\|ref\|ZP_00924303.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli 101-1],... DXS_ECOK1 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O1:K1 / APEC GN=dxs PE=3 SV=1 DXS_SHIBS - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=dxs PE=3 SV=... gi\|75237198, gi\|... - gi\|75237198\|ref\|ZP_00721245.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli E110019... gi\|192927208, gi... - gi\|75256792\|ref\|ZP_00728397.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli E22], g...	613.0	[0..1]	[620..1]
gi\|168761625, gi... - gi\|189367974\|gb\|EDU86390.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|168756961, gi... - gi\|189356019\|gb\|EDU74438.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|188015927, gi... - gi\|188015927\|gb\|EDU54049.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|189373486, gi... - gi\|189373486\|gb\|EDU91902.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|168783285, gi... - gi\|188999404\|gb\|EDU68390.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|187768297, gi... - gi\|187768297\|gb\|EDU32141.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|168768370, gi... - gi\|189362524\|gb\|EDU80943.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|254591004, gi... - gi\|254791604\|ref\|YP_003076441.1\| 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requi... gi\|13359931, gi\|... - gi\|15829728\|ref\|NP_308501.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. ... gi\|208815074, gi... - gi\|208815074\|ref\|ZP_03256253.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 st... gi\|208806479, gi... - gi\|208806479\|ref\|ZP_03248816.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 st... DXS_ECO57 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 GN=dxs PE=3 SV=3 gi\|195938513 - gi\|195938513\|ref\|ZP_03083895.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 st... gi\|25311147, gi\|... - pir\|\|F85538 1-deoxy-D-xylulose 5-phosphate synthase [imported] - Escherichia coli (strain O157:H7, s... gi\|189377438, gi... - gi\|189377438\|gb\|EDU95854.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 str. E... gi\|12513276, gi\|... - gi\|15800150\|ref\|NP_286162.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 EDL93... gi\|217321887, gi... - gi\|217325666\|ref\|ZP_03441750.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 st... DXS_ECO5E - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dxs PE... gi\|208737046, gi... - gi\|208822853\|ref\|ZP_03263171.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli O157:H7 st...	613.0	[0..1]	[620..1]
gi\|227838658, gi... - gi\|227884572\|ref\|ZP_04002377.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Escherichia coli 83972], gi... DXS_ECOL6 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... DXS_ECO81 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O81 (strain ED1a) GN=dxs PE=3 SV=1 DXS_ECOL6 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O6 GN=dxs PE=3 SV=3 DXS_ECO7I - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dxs PE=3...	613.0	[0..1]	[620..1]
gi\|30061914, gi\|... - gi\|30061914\|ref\|NP_836085.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Shigella flexneri 2a str. 2457...	612.0	[0..1]	[620..1]
gi\|194432557, gi... - gi\|83570312\|ref\|ZP_00921757.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Shigella dysenteriae 101...	612.0	[0..1]	[620..1]
DXS_SHIDS - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dxs PE=...	612.0	[0..1]	[620..1]
DXS_SHIFL - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella flexneri GN=dxs PE=3 SV=1 gi\|24050586, gi\|... - gi\|24111798\|ref\|NP_706308.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Shigella flexneri 2a str. 301]...	612.0	[0..1]	[620..1]
DXS_ECOLC - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G... gi\|124500206, gi... - gi\|124528869\|ref\|ZP_01700054.1\| deoxyxylulose-5-phosphate synthase [Escherichia coli B], gi\|12450020... DXS_ECOSE - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain SE11) GN=dxs PE=3 SV=1 DXS_ECO8A - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O8 (strain IAI1) GN=dxs PE=3 SV=1 gi\|75512481, gi\|... - gi\|75512481\|ref\|ZP_00735020.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli 53638],... gi\|75230145, gi\|... - gi\|75230145\|ref\|ZP_00716649.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli B7A], g... DXS_ECOHS - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O9:H4 (strain HS) GN=dxs PE=3 SV=1 DXS_ECO24 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dxs ...	611.0	[0..1]	[620..1]
gi\|75238747, gi\|... - gi\|75238747\|ref\|ZP_00722735.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Escherichia coli F11], g...	611.0	[0..1]	[620..1]
DXS_SHISS - 1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella sonnei (strain Ss046) GN=dxs PE=3 SV=1	611.0	[0..1]	[620..1]

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Predicted Domain #1

Region A:
Residues: [1-620]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFDIAKYPT LALVDSTQEL RLLPKESLPK LCDELRRYLL DSVSRSSGHF ASGLGTVELT  60
   61 VALHYVYNTP FDQLIWDVGH QAYPHKILTG RRDKIGTIRQ KGGLHPFPWR GESEYDVLSV 120
  121 GHSSTSISAG IGIAVAAEKE GKNRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVILND 180
  181 NEMSISENVG ALNNHLAQLL SGKLYSSLRE GGKKVFSGVP PIKELLKRTE EHIKGMVVPG 240
  241 TLFEELGFNY IGPVDGHDVL GLITTLKNMR DLKGPQFLHI MTKKGRGYEP AEKDPITFHA 300
  301 VPKFDPSSGC LPKSSGGLPS YSKIFGDWLC ETAAKDNKLM AITPAMREGS GMVEFSRKFP 360
  361 DRYFDVAIAE QHAVTFAAGL AIGGYKPIVA IYSTFLQRAY DQVLHDVAIQ KLPVLFAIDR 420
  421 AGIVGADGQT HQGAFDLSYL RCIPEMVIMT PSDENECRQM LYTGYHYNDG PSAVRYPRGN 480
  481 AVGVELTPLE KLPIGKGIVK RRGEKLAILN FGTLMPEAAK VAESLNATLV DMRFVKPLDE 540
  541 ALILEMAASH EALVTVEENA IMGGAGSGVN EVLMAHRKPV PVLNIGLPDF FIPQGTQEEM 600
  601 RAELGLDAAG MEAKIKAWLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	176.0
Match:	2o1sA
Description:	No description for 2o1sA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits