YRC Public Data Repository - Protein Structure Prediction

Protein:	EG10704
Organism:	Escherichia coli K-12
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EG10704.

Description	E-value	Query Range	Subject Range
gi\|218557327, gi... - gi\|218557327\|ref\|YP_002390240.1\| phosphatidylglycerophosphatase A [Escherichia coli S88], gi\|2183640... gi\|215263571, gi... - gi\|215485499\|ref\|YP_002327930.1\| phosphatidylglycerophosphatase A [Escherichia coli O127:H6 str. E23... gi\|115511803, gi... - gi\|117622679\|ref\|YP_851592.1\| phosphatidylglycerophosphatase A [Escherichia coli APEC O1], gi\|115511... gi\|227838660, gi... - gi\|227884574\|ref\|ZP_04002379.1\| phosphatidylglycerophosphatase A [Escherichia coli 83972], gi\|227838... gi\|26106822, gi\|... - gi\|26246424\|ref\|NP_752463.1\| phosphatidylglycerophosphatase A [Escherichia coli CFT073], gi\|26106822... gi\|75238745 - gi\|75238745\|ref\|ZP_00722733.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|91209487, gi\|... - gi\|91209487\|ref\|YP_539473.1\| phosphatidylglycerophosphatase A [Escherichia coli UTI89], gi\|91071061\|... gi\|237707588, gi... - gi\|237707588\|ref\|ZP_04538069.1\| phosphatidylglycerophosphatase A [Escherichia sp. 3_2_53FAA], gi\|226... gi\|110342271, gi... - gi\|110640679\|ref\|YP_668407.1\| phosphatidylglycerophosphatase A [Escherichia coli 536], gi\|110342271\|...	223.0	[0..1]	[172..1]
gi\|56128682, gi\|... - gi\|56414425\|ref\|YP_151500.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|238911447 - gi\|238911447\|ref\|ZP_04655284.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|205351731, gi... - gi\|205351731\|ref\|YP_002225532.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|197094822, gi... - gi\|197363345\|ref\|YP_002142982.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|16501688, gi\|... - gi\|25323020\|pir\|\|AD0554 phosphatidylglycerophosphatase A [imported] - Salmonella enterica subsp. ent... gi\|16418925, gi\|... - gi\|16763800\|ref\|NP_459415.1\| phosphatidylglycerophosphatase A [Salmonella typhimurium LT2], gi\|16418... gi\|29142831, gi\|... - gi\|29142831\|ref\|NP_806173.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|16759397 - gi\|16759397\|ref\|NP_455014.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|213615895 - gi\|213615895\|ref\|ZP_03371721.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213427854 - gi\|213427854\|ref\|ZP_03360604.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213025238 - gi\|213025238\|ref\|ZP_03339685.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=pgpA] [protein=phosphatidylglycerophosphatase A] [protein_id=YP_005236112.1] [location=473673.... gi\|206707704, gi... - gi\|207855901\|ref\|YP_002242552.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|224582258, gi... - gi\|224582258\|ref\|YP_002636056.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|214000377 - gi\|214000377\|ref\|ZP_03411112.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213855377 - gi\|213855377\|ref\|ZP_03383617.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213650171 - gi\|213650171\|ref\|ZP_03380224.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric...	222.0	[0..1]	[171..1]
gi\|82542906, gi\|... - gi\|82542906\|ref\|YP_406853.1\| phosphatidylglycerophosphatase A [Shigella boydii Sb227], gi\|81244317\|g...	221.0	[0..1]	[172..1]
gi\|25323011, gi\|... - pir\|\|C85538 phosphatidylglycerophosphatase [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12513273, gi\|... - gi\|15800147\|ref\|NP_286159.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 EDL933], gi\|... gi\|13359928, gi\|... - gi\|15829725\|ref\|NP_308498.1\| phosphatidylglycerophosphatase [Escherichia coli O157:H7], gi\|13359928\|... gi\|195938517 - gi\|195938517\|ref\|ZP_03083899.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. EC40... gi\|13359928, gi\|... - gi\|15829725\|ref\|NP_308498.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. Sakai],... gi\|254791601, gi... - gi\|254791601\|ref\|YP_003076438.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. TW1... gi\|218703700, gi... - gi\|218703700\|ref\|YP_002411219.1\| phosphatidylglycerophosphatase A [Escherichia coli UMN026], gi\|2184...	221.0	[0..1]	[171..1]
gi\|62126664, gi\|... - gi\|62179031\|ref\|YP_215448.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s...	220.0	[0..1]	[171..1]
gi\|81239825, gi\|... - gi\|82775677\|ref\|YP_402024.1\| phosphatidylglycerophosphatase A [Shigella dysenteriae Sd197], gi\|81239...	219.0	[0..1]	[171..1]
gi\|56479651, gi\|... - gi\|56479651\|ref\|NP_706306.2\| phosphatidylglycerophosphatase A [Shigella flexneri 2a str. 301], gi\|56... gi\|30040157, gi\|... - gi\|30061913\|ref\|NP_836084.1\| phosphatidylglycerophosphatase A [Shigella flexneri 2a str. 2457T], gi\|...	219.0	[0..1]	[172..1]
gi\|110613988, gi... - gi\|110804440\|ref\|YP_687960.1\| phosphatidylglycerophosphatase A [Shigella flexneri 5 str. 8401], gi\|1...	217.0	[0..4]	[172..1]
gi\|229681230, gi... - gi\|229901301\|ref\|ZP_04516423.1\| Phosphatidylglycerophosphatase A [Yersinia pestis Nepal516], gi\|2296... gi\|22124911, gi\|... - gi\|22124911\|ref\|NP_668334.1\| phosphatidylglycerophosphatase [Yersinia pestis KIM], gi\|21957748\|gb\|AA...	217.0	[0..8]	[168..10]
gi\|218930209, gi... - gi\|218930209\|ref\|YP_002348084.1\| phosphatidylglycerophosphatase A [Yersinia pestis CO92], gi\|1612334... gi\|166960486, gi... - gi\|167421567\|ref\|ZP_02313320.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|167057250, gi... - gi\|167423080\|ref\|ZP_02314833.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Mediaevalis... gi\|167470225 - gi\|167470225\|ref\|ZP_02334929.1\| phosphatidylglycerophosphatase A [Yersinia pestis FV-1] gi\|169752005, gi... - gi\|170025471\|ref\|YP_001721976.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis YPIII... gi\|186697331, gi... - gi\|186894305\|ref\|YP_001871417.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis PB1/+... Q66DV5\|Q66DV5_YERPS - Phosphatidylglycerophosphatase A - Yersinia pseudotuberculosis gi\|161484852 - gi\|161484852\|ref\|NP_668334.2\| phosphatidylglycerophosphatase A [Yersinia pestis KIM] gi\|25323022 - pir\|\|AC0386 phosphatidylglycerophosphatase (EC 3.1.3.27) [imported] - Yersinia pestis (strain CO92) gi\|77636303, gi\|... - gi\|77636303\|ref\|ZP_00798378.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|165926596, gi... - gi\|165926596\|ref\|ZP_02222428.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|152962208, gi... - gi\|77631908\|ref\|ZP_00794494.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|166011042, gi... - gi\|166011042\|ref\|ZP_02231940.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|51595288, gi\|... - gi\|51595288\|ref\|YP_069479.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis IP 32953]... gi\|166213094, gi... - gi\|166213094\|ref\|ZP_02239129.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|45435458, gi\|... - gi\|45440601\|ref\|NP_992140.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Microtus str. ... gi\|167399623, gi... - gi\|167399623\|ref\|ZP_02305147.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|229899352, gi... - gi\|229899352\|ref\|ZP_04514495.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|229700985, gi... - gi\|229896062\|ref\|ZP_04511232.1\| phosphatidylglycerophosphatase A [Yersinia pestis Pestoides A], gi\|2... gi\|229838784, gi... - gi\|229838784\|ref\|ZP_04458943.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|89105944, gi\|... - gi\|89105944\|ref\|ZP_01178455.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|108808664, gi... - gi\|108808664\|ref\|YP_652580.1\| phosphatidylglycerophosphatase A [Yersinia pestis Antiqua], gi\|1087805... gi\|108774722, gi... - gi\|108811074\|ref\|YP_646841.1\| phosphatidylglycerophosphatase A [Yersinia pestis Nepal516], gi\|108774... gi\|149364975, gi... - gi\|149364975\|ref\|ZP_01887010.1\| phosphatidylglycerophosphatase A [Yersinia pestis CA88-4125], gi\|149... gi\|145600073, gi... - gi\|145600073\|ref\|YP_001164149.1\| phosphatidylglycerophosphatase A [Yersinia pestis Pestoides F], gi\|...	214.0	[0..8]	[168..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILPRHKDV AKSRLKMSNP WHLLAVGFGS GLSPIVPGTM GSLAAIPFWY LMTFLPWQLY  60
   61 SLVVMLGICI GVYLCHQTAK DMGVHDHGSI VWDEFIGMWI TLMALPTNDW QWVAAGFVIF 120
  121 RILDMWKPWP IRWFDRNVHG GMGIMIDDIV AGVISAGILY FIGHHWPLGI LS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.44
Match:	1rfzA
Description:	Structure of hypothetical protein APC35681 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits